PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_co8399941.1_g000001.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

M-type_MADS

Protein Properties

Length: 260aa MW: 30165.6 Da PI: 9.6065

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_co8399941.1_g000001.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	35.9	9.7e-12	11	58	3	49
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT.SEEEEE CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst.gklyey 49 i+ ks r+ tf +R +g+l K e L++LCd + vii+ ++ +l + Rmu_co8399941.1_g000001.1 11 IQKKSSRKSTFKNRSEGLLMKVEQLCILCDLHAFVIIYNPDtEELTVW 58 8899**********************************9861456656 PP

Sequence ? help Back to Top
Protein Sequence Length: 260 aa Download sequence
MTRSKVKLAW IQKKSSRKST FKNRSEGLLM KVEQLCILCD LHAFVIIYNP DTEELTVWPN 60 HQEVEQLLRR FMRLPDFTRR RKMKDQESHM EERVAHMQVE QTRVLKKNKE MELNDVIGQI 120 ERKGKFFHEF SHKELADLDS FLKEKMDEIK KLMDYHDHKN IPHPVVIEDG KSYDHIMSQI 180 GRNTTDSLFV SLKRGKRKQS GIMTKTSGNS SIIVANNMDL PLASNDGHCG AGGMEWASFG 240 VESDGNRSEQ KRINNLGFTS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	78	83	TRRRKM
2	79	109	RRRKMKDQESHMEERVAHMQVEQTRVLKKNK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06500.1	1e-22	M-type_MADS family protein