PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_co8409941.1_g000001.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family GRAS
Protein Properties Length: 349aa    MW: 40144.7 Da    PI: 9.2673
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_co8409941.1_g000001.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS340.13.8e-104234429373
                       GRAS  29 elaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIleavegeerv 112
                                +++sp gd  qRla++f++AL+arla++++++y al +++ s    ++ l++++++  ++P++k+s + aN++Il+a+e++e++
  Rmu_co8409941.1_g000001.1   2 QHSSPFGDCAQRLAHCFANALEARLAGTGTQIYTALCAKRMS---AADMLKFYQAYIAACPFMKMSMIFANHMILKAAEKAETL 82 
                                689*******************************99999998...99************************************* PP

                       GRAS 113 HiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194
                                HiiDf+i +G+QWpaL++ L+ Rp+gpp+lRiTgv+ p sg   +e+++etg+rLak++++++vpfe+ + +ak++e++++++L
  Rmu_co8409941.1_g000001.1  83 HIIDFGILYGFQWPALIHCLSRRPGGPPKLRITGVELPLSGfrPEERVQETGHRLAKYCKRFNVPFEYFA-IAKKWETVQFDDL 165
                                **************************************9999****************************.7************ PP

                       GRAS 195 rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpre 278
                                +v+++E+laVn+  + ++llde+v ++s+rd+vL+l+++l+P+v+v +  + ++ ++ F+ rf eal ++salfd+++++lpre
  Rmu_co8409941.1_g000001.1 166 KVQRNEVLAVNCLCRFKNLLDETVVVKSPRDTVLNLIRKLNPDVFVQSVVNGSYHAPFFVSRFREALFHFSALFDMFDKNLPRE 249
                                ************************************************************************************ PP

                       GRAS 279 seerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgW 362
                                +  r   E+e++gre+vn+vaceg+er+ r et+++W+ r  +aGF+++pl+ ++++++k  +++ +s  + v+e+  ++++gW
  Rmu_co8409941.1_g000001.1 250 DPMRLGFEKEFIGREVVNIVACEGSERTVRPETYKQWQVRNIRAGFRQLPLDCEVMNKIKDKVKTGYSPDFVVDEDGRWMLQGW 333
                                *******************************************************************999************** PP

                       GRAS 363 kdrpLvsvSaW 373
                                k+r ++   +W
  Rmu_co8409941.1_g000001.1 334 KGRIMFGSACW 344
                                *******9999 PP
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    
MQHSSPFGDC AQRLAHCFAN ALEARLAGTG TQIYTALCAK RMSAADMLKF YQAYIAACPF  60
MKMSMIFANH MILKAAEKAE TLHIIDFGIL YGFQWPALIH CLSRRPGGPP KLRITGVELP  120
LSGFRPEERV QETGHRLAKY CKRFNVPFEY FAIAKKWETV QFDDLKVQRN EVLAVNCLCR  180
FKNLLDETVV VKSPRDTVLN LIRKLNPDVF VQSVVNGSYH APFFVSRFRE ALFHFSALFD  240
MFDKNLPRED PMRLGFEKEF IGREVVNIVA CEGSERTVRP ETYKQWQVRN IRAGFRQLPL  300
DCEVMNKIKD KVKTGYSPDF VVDEDGRWML QGWKGRIMFG SACWVPSRT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.11e-179GRAS family protein