PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_co8413867.1_g000001.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family NF-X1
Protein Properties Length: 117aa    MW: 12881.3 Da    PI: 8.428
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_co8413867.1_g000001.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X120.69.8e-071938120
                   zf-NF-X1  1 CGkHkCqklCHeGpCppCpq 20
                               CG+H+C++ C+ G+CppC++
  Rmu_co8413867.1_g000001.1 19 CGRHPCKRRCCDGDCPPCSE 38
                               ******************85 PP
2zf-NF-X118.73.8e-064064119
                   zf-NF-X1  1 CG......kHkCqklCHeGpCppCp 19
                               CG      +HkC ++CH+G C pCp
  Rmu_co8413867.1_g000001.1 40 CGrklrckNHKCPSPCHRGACAPCP 64
                               788888879***************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 117 aa     Download sequence    
VPCHQDLACE RKCQRLRDCG RHPCKRRCCD GDCPPCSEIC GRKLRCKNHK CPSPCHRGAC  60
APCPVMVTIA CLCGATHFEV PCGTEMDQKP PRCRKPCPIT PLCRHGPNSK VDLVALA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05660.16e-57NF-X1 family protein