PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_co8436737.1_g000001.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family C3H
Protein Properties Length: 164aa    MW: 18496.1 Da    PI: 9.7496
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_co8436737.1_g000001.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH46.18.2e-1596120226
                                -S---SGGGGTS--TTTTT-SS-SS CS
                    zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                                ktelC+ + ++G C+yGd+C+FaHg
  Rmu_co8436737.1_g000001.1  96 KTELCNKWEESGACPYGDNCQFAHG 120
                                9***********************9 PP
2zf-CCCH25.62.2e-08133158126
                                --S---SGGGGTS--TTTTT-SS-SS CS
                    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                                ykt +Cr  +  GtC+yG rC+F H+
  Rmu_co8436737.1_g000001.1 133 YKTQICRMVLTRGTCPYGHRCHFRHS 158
                                9**********************998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    
MADELKPLGV GVFSPRDGDE ASDISPTSVI MERNRFNADR FSLPKSISVR SRGYKKVNPS  60
FGANQLLKDG PARVPEEGSS GAMQVKVKAY NQGMLKTELC NKWEESGACP YGDNCQFAHG  120
VRELRPVMRH PRYKTQICRM VLTRGTCPYG HRCHFRHSLN DQHR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.13e-55C3H family protein