PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_co8442277.1_g000001.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MYB
Protein Properties Length: 330aa    MW: 35420.2 Da    PI: 7.3272
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_co8442277.1_g000001.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.43.4e-182572148
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
            Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                               rg+WT+eEdell++++k+ G g+W+t +++ g+ R++k+c++rw +yl
  Rmu_co8442277.1_g000001.1 25 RGPWTPEEDELLANYIKKEGEGRWRTLPKRAGLLRCGKSCRLRWMNYL 72
                               89******************************99************97 PP
2Myb_DNA-binding46.21.1e-1483123648
                                HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
            Myb_DNA-binding   6 teEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                ++E++l+++++++lG++ W++Ia +++ gRt++++k++w+++l
  Rmu_co8442277.1_g000001.1  83 ADEEDLILRLHRLLGNR-WSLIAGRIP-GRTDNEIKNYWNTHL 123
                                79***************.*********.************996 PP
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    
AAPKTAAVSS SSSKTPCCVK VGLKRGPWTP EEDELLANYI KKEGEGRWRT LPKRAGLLRC  60
GKSCRLRWMN YLRPSVKRGQ IAADEEDLIL RLHRLLGNRW SLIAGRIPGR TDNEIKNYWN  120
THLSKKLISQ GIDPRTHKPL NPDTSSADHA AVNNNGAAAS SSKTNQHRGG TSSNPSPKSP  180
ITSSSPEEAA PSARENGYHV TNDDDLGAIV HGANGYGNVM TSNDSNGSAA GMGGLRSNLL  240
IGNEEDEDMN CCTDDVFSSF LNSLINEDPF AAAAAGQHHS QPLQGMQHPN GIAPPADSSA  300
QAFGGWESAV LMSSSFIQND SHRVNVDQTQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13540.17e-77MYB family protein