PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_co8448299.1_g000001.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family Nin-like
Protein Properties Length: 330aa    MW: 36687.8 Da    PI: 8.1234
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_co8448299.1_g000001.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK23.41.2e-07300325126
                     RWP-RK   1 aekeisledlskyFslpikdAAkeLg 26 
                                aek i+le+l+kyFs+++kdAAk+Lg
  Rmu_co8448299.1_g000001.1 300 AEKAITLEVLRKYFSGSLKDAAKSLG 325
                                5899********************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    
MDKPFDLQAV DLRSSKNLNT HNLKASDKPY KAALPEIREV LRSACETHNL PLAQTWVLCI  60
QQGKDGCRHS DDNYVHCVST VDDACHVTYP YIKGFHEACS EHHLLKGQGI VGRAFMTNQP  120
CFSNDITSLA KTEYPLSHHA RLFGLHAAVA IRLRSIHTGS TDFVLEFFLP VDCRDPEQHK  180
KMLTSLSLII QNICRSLRVV TDKELKEETD LPVSEVIVPS DPRPSGISSF AEVQQTDNDV  240
SIFPKEKARK MPSAKSSKLR PQDLNKKEGV DCVGEFSTFG EGSFSSVGAS KTGEKRRTKA  300
EKAITLEVLR KYFSGSLKDA AKSLGGMHLF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76350.11e-113Nin-like family protein