PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_co8454279.1_g000001.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family B3
Protein Properties Length: 376aa    MW: 43639.2 Da    PI: 10.7012
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_co8454279.1_g000001.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.86.4e-1616110199
                                EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS
                         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81 
                                ffkv +p +++++  l++p +f+++h   +++  +  tl+l+ +   sW+v++ +rk++g ++l++GW+eF ++  L +++f+v
  Rmu_co8454279.1_g000001.1  16 FFKVILPGYSTEH--LRFPPRFLRKHivnKLS--KRATLKLKRSPAWSWKVEV-MRKSGGDVYLKDGWQEFLRDACLGDKEFLV 94 
                                7888866666665..9**********976555..4558999999999999999.6888888*********************** PP

                                EEE-SSSEE..EEEEE-S CS
                         B3  82 Fkldgrsefelvvkvfrk 99 
                                F ++g+++f   +kv++k
  Rmu_co8454279.1_g000001.1  95 FIYNGKMRF--SIKVYDK 110
                                ***999999..7777776 PP
2B340.54.8e-132933741297
                                HTT-EE--HHH.HTT..---..--SEEEEEETTS-EE.EEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                         B3  12 ksgrlvlpkkfaeeh..ggkkeesktltledesgrsW.evkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                                +++++++pk+f  e+  +g   +   + l++++g +W +vkl  +++ ++ ++tkGW  F+ an++k+g  + F++ +  e + 
  Rmu_co8454279.1_g000001.1 293 RLSQVYMPKPFYGENlsSG---NYEVIYLKNSEGTKWyKVKL--SRYHNTAFMTKGWGAFAVANQVKVGSLCQFQFLK--ENRI 369
                                567899******9996533...3457********99867999..*******************************766..4556 PP

                                EEEEE CS
                         B3  93 vvkvf 97 
                                vv+++
  Rmu_co8454279.1_g000001.1 370 VVHIL 374
                                88876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    
MVKISRNGVE EKKPSFFKVI LPGYSTEHLR FPPRFLRKHI VNKLSKRATL KLKRSPAWSW  60
KVEVMRKSGG DVYLKDGWQE FLRDACLGDK EFLVFIYNGK MRFSIKVYDK NGCERMDFPD  120
IKTHQHTTSS RSTKRPVRRP RKSSAGNSAD KLKKVKEEEV DCNNTTDKCA SKSTEMLRGR  180
PTKTTEEYTK RRLGRPTKPT SKSTKRPPVR ATKKTSESTK RPPITPAKTT FESTKRPRGR  240
PRKYPVTCKD SGKHSPNSEF DVLREVKEEE EDFQESGELF KSKLQYFTCK INRLSQVYMP  300
KPFYGENLSS GNYEVIYLKN SEGTKWYKVK LSRYHNTAFM TKGWGAFAVA NQVKVGSLCQ  360
FQFLKENRIV VHILNN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1235243KRPRGRPRK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35310.11e-14B3 family protein