PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_co8458561.1_g000001.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

MYB_related

Protein Properties

Length: 445aa MW: 48849.3 Da PI: 7.8708

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_co8458561.1_g000001.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	53.5	5.6e-17	54	98	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT+eE++++++a k++G g W+ I +++g ++t+ q++s+ qk+ Rmu_co8458561.1_g000001.1 54 REKWTEEEHQKFLEALKLYGRG-WRQIEEHVG-TKTAVQIRSHAQKF 98 789*****************.*****.**********98 PP

Sequence ? help Back to Top
Protein Sequence Length: 445 aa Download sequence
QSEATGSNAS VAAGNCSSKG DAQSKLVTEL KDTSSFGNDQ ALKVRKPYTI TKQREKWTEE 60 EHQKFLEALK LYGRGWRQIE EHVGTKTAVQ IRSHAQKFFS KVAKESTGNG EGSLKPIEIP 120 PPRPKRKPMH PYPRKLNGSP ERRSPSPNFS VAEKGQESPT SVLSVPGSDV IGSAALDQYN 180 RSRPSTSCTT DMRSTNLSHV EKENDYATSN SSLEEAKESM PPADSTLDEP LSMKDESASK 240 YTSTTEGDAA TVGGSTSIKL FGRTVLVSDL HKQSPPDTKG CTLSISMAKQ ENYEIECGKF 300 GQPLQWDQSD TRLSLGGVVS NWNSLACGST IDRSEHQNES PKSVQANPDA LHPLPWWVNL 360 PFCQVIRLNS RVDEQLKEKE RSCAGSNDGS VSSIDSLCEE ARSVVPCNSR KGFVPYKRCL 420 ADTNRNSSVI VSEEMRDRQR ARVCS

Sequence ? help Back to Top

Protein Sequence Length: 445 aa Download sequence

QSEATGSNAS VAAGNCSSKG DAQSKLVTEL KDTSSFGNDQ ALKVRKPYTI TKQREKWTEE  60
EHQKFLEALK LYGRGWRQIE EHVGTKTAVQ IRSHAQKFFS KVAKESTGNG EGSLKPIEIP  120
PPRPKRKPMH PYPRKLNGSP ERRSPSPNFS VAEKGQESPT SVLSVPGSDV IGSAALDQYN  180
RSRPSTSCTT DMRSTNLSHV EKENDYATSN SSLEEAKESM PPADSTLDEP LSMKDESASK  240
YTSTTEGDAA TVGGSTSIKL FGRTVLVSDL HKQSPPDTKG CTLSISMAKQ ENYEIECGKF  300
GQPLQWDQSD TRLSLGGVVS NWNSLACGST IDRSEHQNES PKSVQANPDA LHPLPWWVNL  360
PFCQVIRLNS RVDEQLKEKE RSCAGSNDGS VSSIDSLCEE ARSVVPCNSR KGFVPYKRCL  420
ADTNRNSSVI VSEEMRDRQR ARVCS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18330.1	2e-59	MYB_related family protein