PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_co8458813.1_g000001.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family HB-other
Protein Properties Length: 211aa    MW: 24204.2 Da    PI: 6.3979
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_co8458813.1_g000001.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox68.86.7e-2281136156
                                TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                   Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                                +++ +++t++q++e+e+lF+++++p+ ++r++L+  lgL+ rqVk+WFqNrR+++k
  Rmu_co8458813.1_g000001.1  81 KKRYHRHTAHQIQEMENLFKECPHPDDKQRQKLSLDLGLKPRQVKFWFQNRRTQMK 136
                                688999***********************************************998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    
MGGGNVVNSE TLFSSPMQNP NFNFMPFQPF SSILPKEETG LMTRGKEEMM ESGSGSEHAE  60
EKYSGNEQET EEQLQQQPPK KKRYHRHTAH QIQEMENLFK ECPHPDDKQR QKLSLDLGLK  120
PRQVKFWFQN RRTQMKAQQD RADNVMLRAE NDTLKNENYR LQAALRNIIC PNCGGAAMIG  180
DIALDEHQLH LENARLREEV CNSIVAMAGN C
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46880.17e-57HD-ZIP family protein