PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_co8465007.1_g000001.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family GRAS
Protein Properties Length: 496aa    MW: 54347.2 Da    PI: 5.6692
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_co8465007.1_g000001.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS345.49.1e-1061084871374
                       GRAS   1 lvelLlecAeavssgdle..laqalLarlselaspdg.dpmqRlaayfteALaarlar.svselykalppsetsekn...ssee 77 
                                lv+lL+++Aea++  +++  la+ +L rl+el+sp++ ++m+RlaayfteAL+  l +  + + +k l  + +++++    +++
  Rmu_co8465007.1_g000001.1 108 LVHLLMAAAEALTGANKSrdLARVILVRLKELVSPTDgTNMERLAAYFTEALQGLLEGaGGVSHSKHLFGNGSHREHghhPTDV 191
                                68**********997776669***********9987769*****************9953334444443333333334569999 PP

                       GRAS  78 laalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp..slRiTgvgspesg..skee 157
                                +aa++l++++sP++kf+h+taNqaIleav++++rvHi+D+di++G+QWp+L+qaL sR++gpp  +lRiT++++  sg  s  +
  Rmu_co8465007.1_g000001.1 192 MAAFQLLQDMSPYVKFGHFTANQAILEAVAHDRRVHIVDYDIMEGIQWPSLMQALVSRKDGPPtpHLRITALSRGGSGrrSIGT 275
                                ***********************************************************776556*********888898999* PP

                       GRAS 158 leetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvv 241
                                ++etg+rL+ fA+++g pf+f+    ++ e++++++L++ +gEal++n++l+l ++  +s ++     ++L+  k+l+P++v++
  Rmu_co8465007.1_g000001.1 276 VQETGRRLTAFATSIGQPFSFHQCRLDSDETFRPSALKLVKGEALVINCMLNLPHFSYRSPDSIA---SFLSGAKTLNPRLVTL 356
                                ***********************9999*****************************966665555...9*************** PP

                       GRAS 242 veqeadh.nsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGF 324
                                ve+e+   +++ F++rf+++l++ysa++dslea++p +s++r  vEr++lg++i   +a   ++     e   +W e+l++ GF
  Rmu_co8465007.1_g000001.1 357 VEEEVRPaGDGGFVARFMDSLYHYSAVYDSLEAGFPMQSRARELVERVFLGPRIAGSLARIYRA---HGEVGCSWWEWLGAIGF 437
                                *****999******************************************************99...677788*********** PP

                       GRAS 325 kpvplsekaakqaklllrkvksdgyrveee.sgslvlgWkdrpLvsvSaWr 374
                                kp+p+s  + +qaklll  ++ dgyrvee  ++ lvlgWk+r+L+s+S W+
  Rmu_co8465007.1_g000001.1 438 KPMPISFANHCQAKLLLGLFN-DGYRVEEVaNHRLVLGWKSRSLLSASIWT 487
                                *********************.******86488899**************6 PP
Sequence ? help Back to Top
Protein Sequence    Length: 496 aa     Download sequence    
LDLSGCSTET TSTTNTAISP DQWYDWSPVV DWESLAPIDQ LAGGGDFHEL IESMMEGRDG  60
GEMDSPSSET IEEASNSCYT TTSSQSTDVT MLEEGVASNG EDSKGLRLVH LLMAAAEALT  120
GANKSRDLAR VILVRLKELV SPTDGTNMER LAAYFTEALQ GLLEGAGGVS HSKHLFGNGS  180
HREHGHHPTD VMAAFQLLQD MSPYVKFGHF TANQAILEAV AHDRRVHIVD YDIMEGIQWP  240
SLMQALVSRK DGPPTPHLRI TALSRGGSGR RSIGTVQETG RRLTAFATSI GQPFSFHQCR  300
LDSDETFRPS ALKLVKGEAL VINCMLNLPH FSYRSPDSIA SFLSGAKTLN PRLVTLVEEE  360
VRPAGDGGFV ARFMDSLYHY SAVYDSLEAG FPMQSRAREL VERVFLGPRI AGSLARIYRA  420
HGEVGCSWWE WLGAIGFKPM PISFANHCQA KLLLGLFNDG YRVEEVANHR LVLGWKSRSL  480
LSASIWTSPP QSDFAD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.11e-163GRAS family protein