PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_co8470117.1_g000001.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family C3H
Protein Properties Length: 251aa    MW: 29303.6 Da    PI: 7.3051
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_co8470117.1_g000001.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.63.3e-063861226
                               -S---SGGGGTS--TTTTT-SS-SS CS
                    zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                               k  lC f+ + G+C  G +CkF+H+
  Rmu_co8470117.1_g000001.1 38 KSILCEFYKA-GQCAKGFKCKFSHD 61
                               6679**7777.*************7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    
MVENLKKKEE EKAKDKELNE LFKVAISQPK VPVGVDPKSI LCEFYKAGQC AKGFKCKFSH  60
DLNVQRKGEK IDLYSDKRQN ETMEEWDQET LEKVVESKRK EYNINKPTDI VCKYFLEAVE  120
KKQYGWFWVC PNGGKDCHYR HALPPGYILK SQMKALLEEE TEKIPIEEEI EDQRAKLKTS  180
TPMTPELFMQ WKKKKIAERD AGLASKMAER AKNDRMSGRE LFLSDSTLFV DDAEASEKYQ  240
REKESEVAEK K
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20280.11e-125C3H family protein