PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_co8470725.1_g000001.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family M-type_MADS
Protein Properties Length: 210aa    MW: 24575.5 Da    PI: 4.3885
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_co8470725.1_g000001.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF55.19.4e-18957149
                               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
                     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                               k+i+nk   + tfskRr+g++ KA EL+ +C+ae+a++ +s+ gk+y +
  Rmu_co8470725.1_g000001.1  9 KKIDNKAYLKATFSKRRKGLFRKAAELCDMCGAEIAILTVSPGGKFYNF 57
                               689********************************************99 PP
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    
MGRRKIEIKK IDNKAYLKAT FSKRRKGLFR KAAELCDMCG AEIAILTVSP GGKFYNFGHP  60
NVDSIIARYC GDETSCILYE NHDCVSHEDD DEDLEGEQEK EEDITDDVDE DEPMPIHEEE  120
PIHKAGEEKE LIDLINREGD GTMRLSIDFS RKFWWNEEEP IDPEQREMYI HSLMELRNNV  180
IWVLNDRNRR ESYVKDYMGG DISYDMVTLK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1177190RNNVIWVLNDRNRR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.12e-26M-type_MADS family protein