PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_co8472159.1_g000001.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

AP2

Protein Properties

Length: 351aa MW: 39811.9 Da PI: 6.1949

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_co8472159.1_g000001.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	48.3	2.5e-15	5	64	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+++GV++++++gr++A+++d s+n k+ k+++lg ++ +e Aa+a++ a++k++g Rmu_co8472159.1_g000001.1 5 SRFRGVSRHRWTGRFEAHLWDkLSWNItqkKKgKQVYLGAYDEEESAARAYDLAALKYWG 64 789****************888855655447***********************98 PP
2	AP2	52.6	1.1e-16	107	158	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ +grW+A+I + g +k+ +lg++ t eeAa+a++ a+ +++g Rmu_co8472159.1_g000001.1 107 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYSTQEEAARAYDIAAIEYRG 158 89**99******99966...3.6***********************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 351 aa Download sequence
MKRSSRFRGV SRHRWTGRFE AHLWDKLSWN ITQKKKGKQV YLGAYDEEES AARAYDLAAL 60 KYWGTSTFTN FPISDYENEI EIMQSVTKEE YLASLRRKSS GFSRGVSKYR GVARHHHNGR 120 WEARIGRVFG NKYLYLGTYS TQEEAARAYD IAAIEYRGIN AVTNFDLSSY IRWLKPKVDS 180 TIAAQELETV AEPENIPFMA SNYIPTEESP LSHTNPFASD YLTSPKQEVS RSNVPLDSSS 240 KSSSPTALGL LLQSSIFREL VQKNSNYSED ESTDGEEQKN QAQGGSDDEY GGPFSYDRIG 300 ANSPFVSSTN RESIELQERE LLHSPWNSFA STMLLNQTTK ADASESLFFF S

Sequence ? help Back to Top

Protein Sequence Length: 351 aa Download sequence

MKRSSRFRGV SRHRWTGRFE AHLWDKLSWN ITQKKKGKQV YLGAYDEEES AARAYDLAAL  60
KYWGTSTFTN FPISDYENEI EIMQSVTKEE YLASLRRKSS GFSRGVSKYR GVARHHHNGR  120
WEARIGRVFG NKYLYLGTYS TQEEAARAYD IAAIEYRGIN AVTNFDLSSY IRWLKPKVDS  180
TIAAQELETV AEPENIPFMA SNYIPTEESP LSHTNPFASD YLTSPKQEVS RSNVPLDSSS  240
KSSSPTALGL LLQSSIFREL VQKNSNYSED ESTDGEEQKN QAQGGSDDEY GGPFSYDRIG  300
ANSPFVSSTN RESIELQERE LLHSPWNSFA STMLLNQTTK ADASESLFFF S

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54320.3	4e-94	AP2 family protein