PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_co8474195.1_g000001.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

C2H2

Protein Properties

Length: 237aa MW: 27427.8 Da PI: 8.1011

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_co8474195.1_g000001.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	23	2e-07	56	77	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C+ Cg sF+ + +Lk+H+++H Rmu_co8474195.1_g000001.1 56 TCEECGASFKKPAHLKQHMQSH 77 6*******************99 PP
2	zf-C2H2	17.9	8.3e-06	139	163	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 y+C+ dC +++rk++L+rH+ H Rmu_co8474195.1_g000001.1 139 YVCTidDCRSTYRRKDHLNRHLLQH 163 99*******************9887 PP
3	zf-C2H2	18.1	7.4e-06	208	232	1	23
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 ++C+ Cgk+F+ s L++H +H Rmu_co8474195.1_g000001.1 208 HVCQepGCGKVFKFASKLRKHEDSH 232 689999***************9888 PP

Sequence ? help Back to Top
Protein Sequence Length: 237 aa Download sequence
MDERPIFRDI RRYYCEYCGI CRSKKTLIAS HIQAQHKDEM EMAKGHEEVV VEKSNTCEEC 60 GASFKKPAHL KQHMQSHSLE ESTCLRTKPF GSREALDPTK ELQNARGYGL EWTSTRGETS 120 CEAPSSDPQS RSGTFERPYV CTIDDCRSTY RRKDHLNRHL LQHQGKLFKC PIENCKSEFA 180 FQGNVKRHVV EFHSEDCPST SVESQKQHVC QEPGCGKVFK FASKLRKHED SHGRFYF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72050.2	3e-40	C2H2 family protein