PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_co8475067.1_g000001.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

Trihelix

Protein Properties

Length: 375aa MW: 40726.9 Da PI: 10.4767

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_co8475067.1_g000001.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	48.9	1.7e-15	67	154	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcp 80 +W+++ + +Liea e+ +l+rg+lk+++W+ev++ + +++ ++ +qCk++++ ++k+yk +k + + + s++p Rmu_co8475067.1_g000001.1 67 CWSESATAVLIEAWGERYLELSRGNLKQKHWKEVADIVssreDYGKIPKTDIQCKNRIDTVKKKYKLEKSKMMAG--GGPSKWP 148 7***********************************8766667789999**************999987..67778 PP trihelix 81 yfdqle 86 +f++l+ Rmu_co8475067.1_g000001.1 149 FFEKLD 154 ****98 PP

Sequence ? help Back to Top
Protein Sequence Length: 375 aa Download sequence
MEEDDEMHSP VSAGSGSPAS PRANGRITVT VAVPSQIPAA AQESPQNNTL TLALPSQVRS 60 SGGREDCWSE SATAVLIEAW GERYLELSRG NLKQKHWKEV ADIVSSREDY GKIPKTDIQC 120 KNRIDTVKKK YKLEKSKMMA GGGPSKWPFF EKLDHLIGAT AKGTPGSASG GGSVPPGFLA 180 KNHKIPMGMP VGVRGGGVGH FVPKHQQQLQ QLQKANAKKR DPVEWDSDSS REVSPVSADS 240 FPPPVSELKR PRMAGRGANT GLGRGRGGGG GGVGKEIRGR VGGGEKKGGW GNSMRELTQA 300 MLRFGEAYEH AETAKLQQVV EMEKQRMKFA KELELQRMQF FMKTQLEISQ LKHGRRNGNA 360 SNHHRSNNNN NSDSN

Sequence ? help Back to Top

Protein Sequence Length: 375 aa Download sequence

MEEDDEMHSP VSAGSGSPAS PRANGRITVT VAVPSQIPAA AQESPQNNTL TLALPSQVRS  60
SGGREDCWSE SATAVLIEAW GERYLELSRG NLKQKHWKEV ADIVSSREDY GKIPKTDIQC  120
KNRIDTVKKK YKLEKSKMMA GGGPSKWPFF EKLDHLIGAT AKGTPGSASG GGSVPPGFLA  180
KNHKIPMGMP VGVRGGGVGH FVPKHQQQLQ QLQKANAKKR DPVEWDSDSS REVSPVSADS  240
FPPPVSELKR PRMAGRGANT GLGRGRGGGG GGVGKEIRGR VGGGEKKGGW GNSMRELTQA  300
MLRFGEAYEH AETAKLQQVV EMEKQRMKFA KELELQRMQF FMKTQLEISQ LKHGRRNGNA  360
SNHHRSNNNN NSDSN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G14180.1	4e-50	Trihelix family protein