PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_co8476373.1_g000001.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family B3
Protein Properties Length: 203aa    MW: 23493.1 Da    PI: 4.9824
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_co8476373.1_g000001.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B340.16.7e-132574099
                               ETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                         B3 40 desgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                               d+s+ sW+v +  +++ g++++++GW++Fv++n L   +f+vF+++++++f   + +f++
  Rmu_co8476373.1_g000001.1  2 DSSNSSWTVDV--SQTEGEIYFKNGWQKFVRDNSLGNFEFLVFRYESDMQF--SIEIFDR 57
                               88999******..********************************999999..9999987 PP
2B344.82.3e-141161991295
                                HT.T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE.....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
                         B3  12 ks.grlvlpkkfaeehggkkeesktltledesgrsWevkliy...rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                                ++  +l +p +f  ++   + +  t++l++++ r+Wev +     + + +++ l++GW  F ++n++++gD+++F+l++  +++
  Rmu_co8476373.1_g000001.1 116 QNfYNLAVPTDFSMKYF--PLGYYTIVLKNSEAREWEVSVVPngkDASCNTVKLSAGWAAFRRDNQINSGDTCTFELVE--SKT 195
                                44445889999988884..345669***************66554555555*************************976..555 PP

                                .EEE CS
                         B3  92 lvvk 95 
                                ++v+
  Rmu_co8476373.1_g000001.1 196 MLVH 199
                                6666 PP
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    
MDSSNSSWTV DVSQTEGEIY FKNGWQKFVR DNSLGNFEFL VFRYESDMQF SIEIFDRNAS  60
KRITFPDVRT HRRGIHTQSC QSNKLKEVKE EEEDYQDNKE EEAATLHKTF TSIVGQNFYN  120
LAVPTDFSMK YFPLGYYTIV LKNSEAREWE VSVVPNGKDA SCNTVKLSAG WAAFRRDNQI  180
NSGDTCTFEL VESKTMLVHI DPK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31690.12e-14B3 family protein