PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_co8477681.1_g000001.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

C2H2

Protein Properties

Length: 241aa MW: 26529.3 Da PI: 10.015

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_co8477681.1_g000001.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.5	5.6e-06	56	78	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Rmu_co8477681.1_g000001.1 56 FVCEICNKGFQRDQNLQLHRRGH 78 89*******************88 PP
2	zf-C2H2	17	1.6e-05	132	154	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC+ C+k + +s+ k H++t+ Rmu_co8477681.1_g000001.1 132 WKCERCSKKYAVQSDWKAHMKTC 154 58*******************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 241 aa Download sequence
MGDLDNSSSL VGSTASGEAT FSEPPAKKKR NLPGMPDPEA EVIALSPKTL MATNRFVCEI 60 CNKGFQRDQN LQLHRRGHNL PWKLRQRTTT EVRKRVYVCP ETSCVHHNPT RALGDLTGIK 120 KHFCRKHGEK KWKCERCSKK YAVQSDWKAH MKTCGTREYK CDCGTLFSRR DSFITHRAFC 180 DALAEESAKA QTLGSSQLAN PTPSPNGGKA VVVASPPPPP LTPSNNVVSP ALSIQSSGNI 240 K

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66730.1	1e-119	C2H2 family protein