PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_co8491613.1_g000001.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family GRAS
Protein Properties Length: 353aa    MW: 39401.6 Da    PI: 9.9875
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_co8491613.1_g000001.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS3091.1e-94235220374
                       GRAS  20 aqalLarlsel...aspd....gdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                                aq +L rl+++   +sp+    g+p+qR+a yf+ AL++ l++   ++ ++   + +s+++ ++++ a+k fs +sPi+ fsh+
  Rmu_co8491613.1_g000001.1   2 AQVILDRLNQRqrlSSPNpkplGKPLQRAAVYFKDALQSLLNN---STGSSPVRNLSSWSEIVQTIRAYKGFSGISPIPMFSHF 82 
                                788899998876665544222278******************9...555666666677788*********************** PP

                       GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesgskeeleetgerLakfAeelgvpf 176
                                t+Nqa+lea++g++ vH+iDfdi+ G+Q+++L+++La+++    ++pp lRiT+v+++e   + e + ++e+L++fA+el+++f
  Rmu_co8491613.1_g000001.1  83 TTNQALLEALNGSSFVHVIDFDIGLGGQYASLMKELAEKAdvsrSNPPVLRITAVVPEE--YAVESRLVRENLSQFAQELKIRF 164
                                ***************************************9998889***********66..99999****************** PP

                       GRAS 177 efnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe..adhnsesFlerfl 258
                                ++++l+++++e l+++++++ +gE++a+ l+  ++r l++  +     +++L  ++++sP+vvv+v+ e  a+++++sF + f+
  Rmu_co8491613.1_g000001.1 165 QIEFLLVRTFEILSFKAIKFMEGEKTAILLSPYIMRRLSSAEN----VRAFLGDIRRVSPTVVVFVDGEglAETGATSFRRNFV 244
                                *************************************933333....557*******************88888********** PP

                       GRAS 259 ealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllr 342
                                + le++s +++sl+a +p   e  +k+E +ll+++i+ +v ++g++       + +Wre ++ aG+++v+ls++a  qa++ll 
  Rmu_co8491613.1_g000001.1 245 SGLEFFSIVLESLDAAVPGG-EMVRKIETFLLRPKIEAAVEAAGRR-------VPQWREVFHGAGMRAVELSQFADFQAQCLLG 320
                                ****************9765.66779******************98.......99***************************** PP

                       GRAS 343 kvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                kv+++g++v +++++lvl+W+dr+Lv++SaWr
  Rmu_co8491613.1_g000001.1 321 KVQVRGFHVAKRQAELVLCWHDRALVATSAWR 352
                                *******************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    
LAQVILDRLN QRQRLSSPNP KPLGKPLQRA AVYFKDALQS LLNNSTGSSP VRNLSSWSEI  60
VQTIRAYKGF SGISPIPMFS HFTTNQALLE ALNGSSFVHV IDFDIGLGGQ YASLMKELAE  120
KADVSRSNPP VLRITAVVPE EYAVESRLVR ENLSQFAQEL KIRFQIEFLL VRTFEILSFK  180
AIKFMEGEKT AILLSPYIMR RLSSAENVRA FLGDIRRVSP TVVVFVDGEG LAETGATSFR  240
RNFVSGLEFF SIVLESLDAA VPGGEMVRKI ETFLLRPKIE AAVEAAGRRV PQWREVFHGA  300
GMRAVELSQF ADFQAQCLLG KVQVRGFHVA KRQAELVLCW HDRALVATSA WRC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36710.11e-150GRAS family protein