PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_co8494603.1_g000001.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family GRAS
Protein Properties Length: 436aa    MW: 48835.8 Da    PI: 6.0938
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_co8494603.1_g000001.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS307.23.8e-94314332373
                       GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvs.elykalppsetseknsseelaalkl. 83 
                                ++lL++cA+a++++d++laq++L+ l+++a pdgd++qRl+  f++AL ar ars+s +l +a+++ +++   +++++++ +l 
  Rmu_co8494603.1_g000001.1  31 EQLLVHCAKAIETNDATLAQQILWVLNNIAPPDGDSNQRLTCAFLRALIARAARSGSlKLLAAMNAAQANLAIHTHKFSVIELa 114
                                79****************************************************544267777788887766688888888889 PP

                       GRAS  84 .fsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp...egppslRiTgvgspesg...skeelee 160
                                 f +++P+++f++ +aN+ Ileaveg + +Hi+D+++++++Q p+L +a+asR+     pp l++T+ g  e +      ++ee
  Rmu_co8494603.1_g000001.1 115 gFIDLTPWHRFGFTAANSVILEAVEGYSVIHIVDLSLTHCMQIPTLVDAIASRQdglTTPPLLKLTVAGTTEDVppmLDLSYEE 198
                                9*****************************************************65556***********887798888999** PP

                       GRAS 161 tgerLakfAeelgvpfefnvl.......vakrledleleeLrvkp.......gEalaVnlvlqlhrll...............d 215
                                +g++L +fA++ ++ +ef+v+        a+      +e+Lrv++       +Eal++n++++lh+++               +
  Rmu_co8494603.1_g000001.1 199 LGSKLVNFARSRNIILEFRVIpssytdgFANL-----IEQLRVQNlvypesgHEALVINCHMMLHYIPeetfqnfepcsssstS 277
                                *********************88844444444.....555555555555699***************************99875 PP

                       GRAS 216 esvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvva 299
                                 ++s++s r+ +Lk+v++l P+vvvvv+++ad++s++++ r+ +a++y +  +d++++ lpr s++r+++E+  + ++i+nv+a
  Rmu_co8494603.1_g000001.1 278 ITTSSTSLRSMFLKAVRGLDPTVVVVVDEDADLTSNDLVGRLRSAFNYLWIPYDTVDTFLPRGSKQRQWYEAD-MCWKIENVIA 360
                                5555555788***************************************************************.9********* PP

                       GRAS 300 cegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                                 eg++r+er e + +W +r+++aGF++v+++e+a++++k++l +++  g+ ++ e++ lvl+Wk++++v+++aW
  Rmu_co8494603.1_g000001.1 361 YEGFQRVERLEPKCRWVKRMRSAGFRSVSFGEEAVNEVKAMLDEHA-AGWGLKREEEDLVLTWKGHNVVFATAW 433
                                **********************************************.8999*********************** PP
Sequence ? help Back to Top
Protein Sequence    Length: 436 aa     Download sequence    
MNKNQTHRTR PWPGFPTSSK LTNFGDANCM EQLLVHCAKA IETNDATLAQ QILWVLNNIA  60
PPDGDSNQRL TCAFLRALIA RAARSGSLKL LAAMNAAQAN LAIHTHKFSV IELAGFIDLT  120
PWHRFGFTAA NSVILEAVEG YSVIHIVDLS LTHCMQIPTL VDAIASRQDG LTTPPLLKLT  180
VAGTTEDVPP MLDLSYEELG SKLVNFARSR NIILEFRVIP SSYTDGFANL IEQLRVQNLV  240
YPESGHEALV INCHMMLHYI PEETFQNFEP CSSSSTSITT SSTSLRSMFL KAVRGLDPTV  300
VVVVDEDADL TSNDLVGRLR SAFNYLWIPY DTVDTFLPRG SKQRQWYEAD MCWKIENVIA  360
YEGFQRVERL EPKCRWVKRM RSAGFRSVSF GEEAVNEVKA MLDEHAAGWG LKREEEDLVL  420
TWKGHNVVFA TAWMPA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.11e-175GRAS family protein