PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_co8505681.1_g000001.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family SBP
Protein Properties Length: 244aa    MW: 27610.5 Da    PI: 9.6852
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_co8505681.1_g000001.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP131.82.3e-41123200178
                                --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                        SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                                +Cq+++C+adls+ak yhrrhkvC++hskapvvl++g++qrfCqqCsrfhelsefD++krsCrrrLa+hnerrrk+++
  Rmu_co8505681.1_g000001.1 123 CCQADKCAADLSDAKLYHRRHKVCDHHSKAPVVLLAGISQRFCQQCSRFHELSEFDDTKRSCRRRLAGHNERRRKNSS 200
                                6**************************************************************************975 PP
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    
MEQIAVVLTT LGSLLSLFNL LSFPSSNTKH HITNKPIDIL LPLPDLDSYR LPHFLSSPLL  60
LFLIMEESKS KQRKQENPHV VVKKEVEEEE VLYSKKKKLQ VVSGSGSGSG SVKNQNLNQM  120
MRCCQADKCA ADLSDAKLYH RRHKVCDHHS KAPVVLLAGI SQRFCQQCSR FHELSEFDDT  180
KRSCRRRLAG HNERRRKNSS ESYAEGSSRK GTSTQSCGKV DDMGSGRIQI NIQENSTCKH  240
FQIR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53160.11e-45SBP family protein