PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_co8520481.1_g000001.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MYB_related
Protein Properties Length: 358aa    MW: 39635.4 Da    PI: 5.1041
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_co8520481.1_g000001.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.85.1e-1362103346
                                SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
            Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                                 +T++E+el+v++++  G++ W  Ia+ ++ gRt++++k +w++
  Rmu_co8520481.1_g000001.1  62 TFTPQEEELIVRLHATIGSR-WPIIAQQLP-GRTDNDVKTYWNT 103
                                79******************.*********.***********97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    
MGRPPASCDK LINVKKGTWT EEEDANILAH HVSKNGIGLN RCGKSCKPRW SNYLRANLKH  60
ETFTPQEEEL IVRLHATIGS RWPIIAQQLP GRTDNDVKTY WNTKLKKKLS DMGIDPVTHK  120
PFSQILADYG NIGGLPKSGM RIGIGASLNK DLKNAMLMKS SEPYTSALSN FNNSHLVPTT  180
KIEPMQATSS TKFDNYQPYD LLTQLQAMKY VTEVSNSTTN TNPAPSPVNF YSEGSLSSSS  240
SSTSSSAAVQ EKSPLAFGWS DFLLEDAFVP TEDARGAMPH GEIWDQATMQ DNMAESSSKD  300
MFHQAQTENV GMSYGMSSNQ VEATADPCDS SFVEAMVAKE NDLFLEFPEL LLEEPFYY
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28470.15e-54MYB family protein