PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0000007.1_g000017.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

bHLH

Protein Properties

Length: 249aa MW: 28496.5 Da PI: 7.7585

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0000007.1_g000017.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	30.3	7.5e-10	54	102	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +E++RR++++ ++ L +llP++ ++++ ls e +A++YIk L+ Rmu_sc0000007.1_g000017.1 54 RRVIEKNRRNHMKILYSHLNSLLPNQ--NSKEPLSLPEQIDEAINYIKTLE 102 5689*******************6..26666*************995 PP

Sequence ? help Back to Top
Protein Sequence Length: 249 aa Download sequence
MTISYSVAHP LITTGLCFII IIIIKKIQPS PLLPDVKQVM DNTRATTSGT KVERRVIEKN 60 RRNHMKILYS HLNSLLPNQN SKEPLSLPEQ IDEAINYIKT LESNLQKSKQ KRDNLKFGRK 120 RSYELCSSTF ETRSAAPTKS PQIQIHENGS TLEVVLSTGL HNQFIFYDII RILDQEQADV 180 VHASFSTSGD SILHLVRAEL GKSMLDFGAA RITEKLKRIV NGSASDEELQ HDDQDYFWDF 240 QIHPQMWDF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	111	121	KRDNLKFGRKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G20970.1	1e-37	bHLH family protein