PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0000014.1_g000005.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

C2H2

Protein Properties

Length: 639aa MW: 72182.6 Da PI: 4.9024

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0000014.1_g000005.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.2	0.0011	294	314	2	22
EETTTTEEESSHHHHHHHHHH CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt 22 C Cgk F++ + k+H ++ Rmu_sc0000014.1_g000005.1 294 YCVVCGKKFKSEKQWKNHEQS 314 5*****************876 PP

Sequence ? help Back to Top
Protein Sequence Length: 639 aa Download sequence
MERRCHYEVL GVDRGCTADE IKSAYRKLAL QRHPDKLIPT GVSQADANAQ FQELGHAYEV 60 LSDPKERAWY DSHRSQILFA DPSAANSVPD SVIPNLFSFF STTVFSGYSD SGKGFYKVYA 120 DVFNKIYSNE LSFARKLGLG IDAVREAPAL GNLKSDYAQV TAFYGYWLGF CTVMDFCWVD 180 QYDVMAGPNR KVRRLMEEDN KKQRKKAKRE YNDTVRGLAE FVKKRDKRVM DMMVKREEER 240 ERKKKEERER KKKMDKEKLE RAMAYEEPEW AKAVEEEEEG DDVEEEERKR NELYCVVCGK 300 KFKSEKQWKN HEQSKKHKDK IAEFRESIGD EELDEEEVDD LGDQMREGLE IGEEDDGAGV 360 SASDDEFYDF GDEILREKLD EDDNGGGGDD DDDEMELLQA MAARHKSREK LDGDGDGGDD 420 DGEMLKAMAA RQKSRENVGE AVGVDDGDSG SEDEMDVLEA LVAGRKSRKN AASRVEVEDP 480 LVTGVHVDND SNGVESIPME YENRKPTRRK GKSKKSGGET KRVDMNEISN GQSEAASEND 540 NSDVKESTSD SMVENASTNE KQDYQIARKK KSSKQTVEKK KENVKKEANG KSKSSSKGKK 600 AKATSKNSSN ACEACGEEFG SRNQLHKHLG DTGHASLKR

Sequence ? help Back to Top

Protein Sequence Length: 639 aa Download sequence

MERRCHYEVL GVDRGCTADE IKSAYRKLAL QRHPDKLIPT GVSQADANAQ FQELGHAYEV  60
LSDPKERAWY DSHRSQILFA DPSAANSVPD SVIPNLFSFF STTVFSGYSD SGKGFYKVYA  120
DVFNKIYSNE LSFARKLGLG IDAVREAPAL GNLKSDYAQV TAFYGYWLGF CTVMDFCWVD  180
QYDVMAGPNR KVRRLMEEDN KKQRKKAKRE YNDTVRGLAE FVKKRDKRVM DMMVKREEER  240
ERKKKEERER KKKMDKEKLE RAMAYEEPEW AKAVEEEEEG DDVEEEERKR NELYCVVCGK  300
KFKSEKQWKN HEQSKKHKDK IAEFRESIGD EELDEEEVDD LGDQMREGLE IGEEDDGAGV  360
SASDDEFYDF GDEILREKLD EDDNGGGGDD DDDEMELLQA MAARHKSREK LDGDGDGGDD  420
DGEMLKAMAA RQKSRENVGE AVGVDDGDSG SEDEMDVLEA LVAGRKSRKN AASRVEVEDP  480
LVTGVHVDND SNGVESIPME YENRKPTRRK GKSKKSGGET KRVDMNEISN GQSEAASEND  540
NSDVKESTSD SMVENASTNE KQDYQIARKK KSSKQTVEKK KENVKKEANG KSKSSSKGKK  600
AKATSKNSSN ACEACGEEFG SRNQLHKHLG DTGHASLKR

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	190	227	RKVRRLMEEDNKKQRKKAKREYNDTVRGLAEFVKKRDK
2	201	209	KKQRKKAKR
3	223	245	KKRDKRVMDMMVKREEERERKKK
4	240	252	RERKKKEERERKK
5	568	605	RKVRRLMEEDNKKQRKKAKREYNDTVRGLAEFVKKRDK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G74250.1	1e-146	C2H2 family protein