PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0000023.1_g000012.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

HB-other

Protein Properties

Length: 459aa MW: 53413.4 Da PI: 10.6912

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0000023.1_g000012.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	19.2	2.1e-06	81	103	35	57
HHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 35 kklgLterqVkvWFqNrRakekk 57 +kl+L+++q ++WF+ rR k++k Rmu_sc0000023.1_g000012.1 81 AKLDLSDQQLQMWFCHRRLKDRK 103 689******************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 459 aa Download sequence
MQSHAHPPRI HQLLHLVSSH DHHLQRPRPP VAINLTSHRN QSQLLLRFSI ALISRVYDMV 60 EVRPWRLAWR DRRQELRLNE AKLDLSDQQL QMWFCHRRLK DRKPTPTTGK RQRKDSPART 120 TGMVSEEMAG SEPMSQQLII EARAGAFVEA QLGEPFREAG RYRAWSLIRC HWGPVANTGA 180 AIHIDVGLER MMAALVKVWA EEKERRERRR RRRLRLTKKH KTFFFDFLGR GEGAELAVEL 240 LHRWQGSREA EEKQKRIERR QRKYIKKEAK RRIPAAKQRE VFRDFDGASR SQQAPRSQQA 300 DTKVKISLIY QCYFLCFSCR NLFYSCHYGA VEVLGAVAIS CTVRFMYQQE YDQSGGIRCS 360 SESNTPPLRL CSETCDGTPK CQQTFEPCEN KAAMPLFFHK DSHWFQKSAR SPPRSLLPPA 420 FLSTQQNKWP CTTCKTIHTK NKPAACKQGG KEIKNLRLS

Sequence ? help Back to Top

Protein Sequence Length: 459 aa Download sequence

MQSHAHPPRI HQLLHLVSSH DHHLQRPRPP VAINLTSHRN QSQLLLRFSI ALISRVYDMV  60
EVRPWRLAWR DRRQELRLNE AKLDLSDQQL QMWFCHRRLK DRKPTPTTGK RQRKDSPART  120
TGMVSEEMAG SEPMSQQLII EARAGAFVEA QLGEPFREAG RYRAWSLIRC HWGPVANTGA  180
AIHIDVGLER MMAALVKVWA EEKERRERRR RRRLRLTKKH KTFFFDFLGR GEGAELAVEL  240
LHRWQGSREA EEKQKRIERR QRKYIKKEAK RRIPAAKQRE VFRDFDGASR SQQAPRSQQA  300
DTKVKISLIY QCYFLCFSCR NLFYSCHYGA VEVLGAVAIS CTVRFMYQQE YDQSGGIRCS  360
SESNTPPLRL CSETCDGTPK CQQTFEPCEN KAAMPLFFHK DSHWFQKSAR SPPRSLLPPA  420
FLSTQQNKWP CTTCKTIHTK NKPAACKQGG KEIKNLRLS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	205	212	RRERRRRR
2	205	213	RRERRRRRR
3	207	214	ERRRRRRL
4	208	213	RRRRRR
5	208	215	RRRRRRLR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44180.2	8e-11	HB-other family protein