PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0000028.1_g000010.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MIKC_MADS
Protein Properties Length: 243aa    MW: 28023.8 Da    PI: 9.3664
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0000028.1_g000010.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF58.96.2e-199451551
                               HHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                     SRF-TF 15 kRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                               +R +++lKKA+ELS+LCdaeva+i fs++g+l+eyss
  Rmu_sc0000028.1_g000010.1  9 RRHATLLKKANELSILCDAEVAIIAFSPDGELHEYSS 45
                               5999*******************************96 PP
2K-box29.23.9e-11811582198
                      K-box  21 lakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                                 + L+++ + L+ e+ +++G++L+ Ls   L  L +q  k+l  + skK ell e++++++ +e+++++en  L++kl
  Rmu_sc0000028.1_g000010.1  81 KQELQERHKALRLEKLQRMGKELDGLSSDALATLLEQQTKGLLAVHSKKVELLEEKLQRSRSREEQAKHENGLLEEKL 158
                                45799*******************************************************************999986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    
MPKTANPGRR HATLLKKANE LSILCDAEVA IIAFSPDGEL HEYSSTSMEH TLERYKYRTG  60
LVLPSRVESP APEEHRHEPA KQELQERHKA LRLEKLQRMG KELDGLSSDA LATLLEQQTK  120
GLLAVHSKKV ELLEEKLQRS RSREEQAKHE NGLLEEKLLR SRSREEQTMH ENKSLRRRIA  180
GFMMRQNYKR HILPCHPANY FDRNFGNRMG FCTSSRAAVS VSNYPSEGTD DHLDMTTLRL  240
WPS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13790.11e-21MIKC_MADS family protein