PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0000053.1_g000006.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

bHLH

Protein Properties

Length: 323aa MW: 34897.7 Da PI: 8.3921

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0000053.1_g000006.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	16.4	1.6e-05	202	240	11	54
HHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 11 rRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +RR+++ ++++ L++l+ + +K + a++L +A+ YI+ L Rmu_sc0000053.1_g000006.1 202 KRREKLGERISALQQLVSPF-----GKTDTASVLHEAMGYIRFL 240 8****************8.....8**************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 323 aa Download sequence
MAEKEGFEVD QLGVIEGTSF SQLLYEVEHD VVGLCVDDHQ SQIFNYNTNS CSSLYSATDL 60 KTPKMLCFGD FQNKDRDNHH LGEIGFPEIS ISRPPAQKSG LTCSDSSSVS STSTKAATSS 120 SMSNSNKKRN GVAQEQQVQC ASTTTQAGQR SSKKPKTDKP AAGKKKRNGV AQEQQVQCAS 180 ATTQAGQRSS KKPKTDKPAA GKRREKLGER ISALQQLVSP FGKTDTASVL HEAMGYIRFL 240 HDQVQVLCSP YLKRLPSLPE GGGDGAEKKD EEARSNDLRS RGLCLVPMEH TAHLANNNGA 300 DFWSPATMAS NSNNNNVSSS TGY

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	164	194	KKKRNGVAQEQQVQCASATTQAGQRSSKKPK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19500.1	7e-44	bHLH family protein