PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0000077.1_g000033.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

bHLH

Protein Properties

Length: 364aa MW: 40111.9 Da PI: 6.3593

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0000077.1_g000033.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	38.7	1.8e-12	130	176	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h Er RR+++++ f++L llP++ p K +K++i+ +Av YIk L+ Rmu_sc0000077.1_g000033.1 130 HIYTERERRKKMRNMFANLHALLPQL---P-SKADKSTIVDEAVSYIKRLE 176 7778*******************6...3.8**************995 PP

Sequence ? help Back to Top
Protein Sequence Length: 364 aa Download sequence
MSEREAGAGG SDGVLWENQS WVNLSNSTDN FLLNSNSENS AGGGDEGEDK LGEKEKEMME 60 REDRVQPEVE PVAAPGKKTL VKKRVGRGGA SGVKKHNGKA TKGKGIGSSD EVVEEGKGGD 120 GDSENDHELH IYTERERRKK MRNMFANLHA LLPQLPSKAD KSTIVDEAVS YIKRLEITLQ 180 SLQQQKRERM RSLPSSSMVN HNHSSVLMNS QNVAYDSKEA FLASHASSSN LAAASTTTAN 240 GFNINPDFNT LNHSLSTNSL STEPIVFETW TSSNVVLNMC RDEAQISVCS PKKPGVFTQI 300 CFILEKYKIV VVTAHIISDS HRSMYMIQAQ PSRAPDNQFL EMFPAVEIFK QAVSEINVWI 360 VSTY

Sequence ? help Back to Top

Protein Sequence Length: 364 aa Download sequence

MSEREAGAGG SDGVLWENQS WVNLSNSTDN FLLNSNSENS AGGGDEGEDK LGEKEKEMME  60
REDRVQPEVE PVAAPGKKTL VKKRVGRGGA SGVKKHNGKA TKGKGIGSSD EVVEEGKGGD  120
GDSENDHELH IYTERERRKK MRNMFANLHA LLPQLPSKAD KSTIVDEAVS YIKRLEITLQ  180
SLQQQKRERM RSLPSSSMVN HNHSSVLMNS QNVAYDSKEA FLASHASSSN LAAASTTTAN  240
GFNINPDFNT LNHSLSTNSL STEPIVFETW TSSNVVLNMC RDEAQISVCS PKKPGVFTQI  300
CFILEKYKIV VVTAHIISDS HRSMYMIQAQ PSRAPDNQFL EMFPAVEIFK QAVSEINVWI  360
VSTY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G49770.1	2e-27	bHLH family protein