PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0000099.1_g000011.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family AP2
Protein Properties Length: 442aa    MW: 48971.9 Da    PI: 7.7396
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0000099.1_g000011.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2361.7e-11171227155
                        AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                                s y+GV++++++gr++A+++d  +     ++ k  + g ++ +e+Aa+a++ a++k++g
  Rmu_sc0000099.1_g000011.1 171 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQSrKGRQ-GGYDKEEKAARAYDLAALKYWG 227
                                57*******************5444.2455536655.779999**************98 PP
2AP247.54.5e-15272321355
                        AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                y+GV+++++ grW A+I  +     +k  +lg+f t+eeAa+a++ a+ k++g
  Rmu_sc0000099.1_g000011.1 272 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTEEEAAEAYDIAAIKFRG 321
                                9***************988532...5************************998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 442 aa     Download sequence    
MGSMNSNNWL SFPLSPANSS LPSQLHPSHS HQFSLGLVSD SMDNPFQNHE WNMINTQGSS  60
DVPKVADFLG VGKSDNQSDL VAYNEINANE SVTDYIFPNI NNAIVPVQNA VVGTSSNYDF  120
QENSNSLQSL TLSMGSGKGS STCETSADNT STTTVEAPPR RALDTFGQRT SIYRGVTRHR  180
WTGRYEAHLW DNSCRREGQS RKGRQGGYDK EEKAARAYDL AALKYWGTST TTNFPISNYE  240
KEVEEMKNCT RQEFVASIRR KSSGFSRGAS MYRGVTRHHQ HGRWQARIGR VAGNKDLYLG  300
TFSTEEEAAE AYDIAAIKFR GLNAVTNFDM SRYDVKSILE SNTLPIGGGA AKRLKEAQAL  360
ETSRKREEMI ALGSTFQYAA GSSSSASSAA RNLQAYSLMQ QQPQSAYDQT LLSLQNHDIS  420
QYTHHDPSAY QNYAMSLPPR GF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51190.10.0AP2 family protein