PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0000109.1_g000012.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

Trihelix

Protein Properties

Length: 365aa MW: 40788.6 Da PI: 6.6868

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0000109.1_g000012.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	51.6	2.5e-16	90	178	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstc 79 +W+++ + +Li+ ++ +l+rg+l++++W+ev++++ + ++ +r+ +qCk++++ ++k+yk +k++ +++ +s++ Rmu_sc0000109.1_g000012.1 90 CWSEDATSTLIDSWGSRYLELNRGNLRQKDWQEVADAVnalhgHTKKTHRTDVQCKNRIDTIKKKYKVEKARVSGG---LTSSW 170 7**************************************99999************************997...3458 PP trihelix 80 pyfdqlea 87 p+fd+l+a Rmu_sc0000109.1_g000012.1 171 PFFDRLDA 178 *****985 PP

Sequence ? help Back to Top
Protein Sequence Length: 365 aa Download sequence
MTSTKQLHAL IPATCLLHSR LIRPALSSHR RDLSLNTSPS LSHKTNHNPK PHNFTAPFPM 60 GDLTESSLTP STTTPNSSSN PRPMPVREDC WSEDATSTLI DSWGSRYLEL NRGNLRQKDW 120 QEVADAVNAL HGHTKKTHRT DVQCKNRIDT IKKKYKVEKA RVSGGLTSSW PFFDRLDALI 180 GSNVKKPSPS SLSPSPPVAV PLPLAYRKPS PARPVVTAVA LPQKRSASAA AMNEGFFRMN 240 YSAVAAAAAA ENDDDDEEDE EDEEDNDDGD EEAEVERERE RDSDGEIGGG GGEGLKRLAR 300 AIERFGEVYQ RVEAEKLRQM VELEKQRMQF AKDLEVQRMR MFMDTQVQLE RIKHGKRPGS 360 NDIYS

Sequence ? help Back to Top

Protein Sequence Length: 365 aa Download sequence

MTSTKQLHAL IPATCLLHSR LIRPALSSHR RDLSLNTSPS LSHKTNHNPK PHNFTAPFPM  60
GDLTESSLTP STTTPNSSSN PRPMPVREDC WSEDATSTLI DSWGSRYLEL NRGNLRQKDW  120
QEVADAVNAL HGHTKKTHRT DVQCKNRIDT IKKKYKVEKA RVSGGLTSSW PFFDRLDALI  180
GSNVKKPSPS SLSPSPPVAV PLPLAYRKPS PARPVVTAVA LPQKRSASAA AMNEGFFRMN  240
YSAVAAAAAA ENDDDDEEDE EDEEDNDDGD EEAEVERERE RDSDGEIGGG GGEGLKRLAR  300
AIERFGEVYQ RVEAEKLRQM VELEKQRMQF AKDLEVQRMR MFMDTQVQLE RIKHGKRPGS  360
NDIYS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58630.1	1e-38	Trihelix family protein