PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0000115.1_g000020.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family NAC
Protein Properties Length: 145aa    MW: 16605.4 Da    PI: 6.5162
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0000115.1_g000020.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM61.43e-1971272114
                        NAM   2 ppGfrFhPtdeelvveyLkkk.vegkkleleevikev.diykv.eP...wdLpk.....kvkaeekewyfFskrdkkyatgkrk 74 
                                p+G+rF+Pt+ elv++yL+++ v g++++ ++ i ++ d y   eP   wd+       ++k+ee+ +yfF++r+k +++ k  
  Rmu_sc0000115.1_g000020.1   7 PVGYRFRPTNLELVTYYLHNRvVLGDQFRSSS-IFDCpDFYGQnEPyliWDM-FhaqsnTTKEEEEPLYFFTHRKKLNPKAKIF 88 
                                89*****************9934556677745.5555599976488444444.134443444455567**************** PP

                        NAM  75 nratksgyWkatgkdkevlskkgelvglkktLvfykgrap 114
                                 r++ sg+W+a+ ++++v++ +++++g+k+ + +  g+++
  Rmu_sc0000115.1_g000020.1  89 DRKVGSGTWSAQNSKNDVVV-DDSVIGIKREFRYEGGSDS 127
                                ********************.999*********9866554 PP
Sequence ? help Back to Top
Protein Sequence    Length: 145 aa     Download sequence    
MASGAYPVGY RFRPTNLELV TYYLHNRVVL GDQFRSSSIF DCPDFYGQNE PYLIWDMFHA  60
QSNTTKEEEE PLYFFTHRKK LNPKAKIFDR KVGSGTWSAQ NSKNDVVVDD SVIGIKREFR  120
YEGGSDSHQN GAGLVDARVP DQISQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62380.13e-12NAC family protein