PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0000157.1_g000043.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family GRAS
Protein Properties Length: 558aa    MW: 62489.7 Da    PI: 6.3307
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0000157.1_g000043.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS322.58.5e-991895572374
                       GRAS   2 velLlecAeavssgdlelaqalLarlsel...aspd....gdpmqRlaayfteALaarlarsvselykalppsetseknsseel 78 
                                +e L+++A++++s++l+laq +L rl+++   +sp+    g+p+qR+a yf+ AL++ l++   ++ ++   + +s+++ ++++
  Rmu_sc0000157.1_g000043.1 189 IEELIRAADCFDSDELNLAQVILDRLNQRqrlSSPNpkplGKPLQRAAVYFKDALQSLLNN---STGSSPVRNLSSWSEIVQTI 269
                                679************************987775654222277******************9...555666666677788***** PP

                       GRAS  79 aalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp....egppslRiTgvgspesgskeel 158
                                 a+k fs +sPi+ fsh+t+Nqa+lea++g++ vH+iDfdi+ G+Q+++L+++La+++    ++pp lRiT+v+++e   + e 
  Rmu_sc0000157.1_g000043.1 270 RAYKGFSGISPIPMFSHFTTNQALLEALNGSSFVHVIDFDIGLGGQYASLMKELAEKAdvsrSNPPVLRITAVVPEE--YAVES 351
                                *********************************************************9998889***********66..99999 PP

                       GRAS 159 eetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvv 242
                                + ++e+L++fA+el+++f++++l+++++e l+++++++ +gE++a+ l+  ++r l++  +     +++L  ++++sP+vvv+v
  Rmu_sc0000157.1_g000043.1 352 RLVRENLSQFAQELKIRFQIEFLLVRTFEILSFKAIKFMEGEKTAILLSPYIMRRLSSAEN----VRAFLGDIRRVSPTVVVFV 431
                                *******************************************************933333....557**************** PP

                       GRAS 243 eqe..adhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGF 324
                                + e  a+++++sF + f++ le++s +++sl+a +p   e  +k+E +ll+++i+ +v ++g++       + +Wre ++ aG+
  Rmu_sc0000157.1_g000043.1 432 DGEglAETGATSFRRNFVSGLEFFSIVLESLDAAVPGG-EMVRKIETFLLRPKIEAAVEAAGRR-------VPQWREVFHGAGM 507
                                ***88888**************************9765.66779******************98.......99*********** PP

                       GRAS 325 kpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                ++v+ls++a  qa++ll kv+++g++v +++++lvl+W+dr+Lv++SaWr
  Rmu_sc0000157.1_g000043.1 508 RAVELSQFADFQAQCLLGKVQVRGFHVAKRQAELVLCWHDRALVATSAWR 557
                                *************************************************8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 558 aa     Download sequence    
MRVPVTTPQT NNNNNNSNQS PNPKPETNLG FHTPSRINPN LCYEPTSVLD LRHSPSPVAA  60
DKQSKVSAIS DVLTHPNHHE PLEWVDEQDL HNLDWDSLMR DLGLHDDSVL NLRPTTNTQL  120
NPHPNSEPQI PHLPEYPLPQ PFDPTQLVHS DFNLSGVYSS QNFSHHNLPS YDQTDIHSSV  180
NSNVGFDFIE ELIRAADCFD SDELNLAQVI LDRLNQRQRL SSPNPKPLGK PLQRAAVYFK  240
DALQSLLNNS TGSSPVRNLS SWSEIVQTIR AYKGFSGISP IPMFSHFTTN QALLEALNGS  300
SFVHVIDFDI GLGGQYASLM KELAEKADVS RSNPPVLRIT AVVPEEYAVE SRLVRENLSQ  360
FAQELKIRFQ IEFLLVRTFE ILSFKAIKFM EGEKTAILLS PYIMRRLSSA ENVRAFLGDI  420
RRVSPTVVVF VDGEGLAETG ATSFRRNFVS GLEFFSIVLE SLDAAVPGGE MVRKIETFLL  480
RPKIEAAVEA AGRRVPQWRE VFHGAGMRAV ELSQFADFQA QCLLGKVQVR GFHVAKRQAE  540
LVLCWHDRAL VATSAWRC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36710.11e-172GRAS family protein