PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0000174.1_g000009.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

C2H2

Protein Properties

Length: 1606aa MW: 177351 Da PI: 6.1957

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0000174.1_g000009.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.1	0.00061	1494	1519	1	23
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 ++C+ C++sF +k++L++H r+ + Rmu_sc0000174.1_g000009.1 1494 HSCNlgGCSMSFQTKEELMVHKRNrC 1519 689999****************9876 PP
2	zf-C2H2	11.3	0.0011	1577	1603	1	23
EEET..TTTEEESSHHHHHHHHHH..T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt..H 23 ykC+ Cg sF+ s++ rH r+ H Rmu_sc0000174.1_g000009.1 1577 YKCKvdGCGLSFRFVSDFSRHRRKtgH 1603 99*********************9777 PP

Sequence ? help Back to Top
Protein Sequence Length: 1606 aa Download sequence
MGDVKIPNWL KGLPLAPEFH PTHTEFADPI AYISKIEKEA CEFGICKIIP PLPKPSKRYV 60 FSNLNKSLAK RPELGSDLIP GNDGDAVKVG SGDGSNDGEV RAVFTTRHQE LGQTVKRAKG 120 AGVQDPPPSG VDKQVWQSGE VYTLEQFESK SRAFARSILG TIRDVSPLVI EAMFWKAASE 180 KPIYIEYAND VPGSAFEEPE GLLCYSRRRR RKRNSYHRSG PNSDSKKSEM ISSCERKSQN 240 GEVEDASPKN VSLTSVEVPK SSALPGIVST DETSQSSRKK SQNSSCDVEG TAGWKLSNSP 300 WNLQVIARSP GSLTRFMPDD IPGVTSPMVY IGMLFSWFAW HVEDHELHSM NFLHNGSAKT 360 WYSVPGDYAF AFEELIRTEA YGGTADRLAA LSLLGNKTTL MSPEVVIASG IPCCRLIQNP 420 GEFVVTFPRA YHVGFSHGFN CGEAANFGTP QWLKVAKEAA VRRAAMNYLP MLSHQQLLYL 480 STMSFVSRVP KSLLPGVRSS RMRDRQKEDR ELSVKKAFIE DILNENDVLS ALLGKESSCR 540 AVLWNPDLLP NASKESSIPT ASAPVDTNSK ENATDTQGGN STNDQNFLVD EMSLYMENLN 600 DLYLGSDDLS DDFQVDSGTL ACVACGILGF PFMSVVQPSE KASMELQPEC ILAEELPGVS 660 GNSHISPEHS ESFKGCATED NAFPHARDPV LPCTTRFNNC WNTVDKFLRP RSFCLEHAVE 720 TLELLQCKGG ANMLVICHSD YQKIKAPAAA IAEEIGCPFN YNEVPLDIAS NEDLNLIDLA 780 VDDGCDECGE DWTSKLGINL RYCVKVRKSS SSKRVQHALA LGEVFSKQSC SSEFLAVNWK 840 SRRSRTKKVY LDAPYKQCDS IDKKKEEVVE AKSADATSFK REAKIIQYSR RNKRKPSTST 900 GAGRVVEHPG TSEELDKHNR RASDNSIYNN GKSTSICARL DSFTSDSTEM HPDVQMLEAT 960 RDICLDSTLS QAADTVALTA GSADAQIENR SLEERNMNGG GCNLAVSESG MQDEIKILKE 1020 ARQNNSIIPL VIARDERSEK HRGEQENEKL NKNDDNCNLV SEGQSQLWSQ EDVLMNVVSV 1080 FTKSTNLSAA DSIVTSSEEQ IVNAVIEKSC VNSEVCESMT LGDEVQQEIQ TTNRSNDKAP 1140 VSCSSTLLND PTFAAAECQV EFERETHIVE EFSNVVSSEF KPEEDIEIPK GRYAKPSLSP 1200 TRRVGQHSPA STDRLSGVAK AFCASADFQP GPTSHGEEFQ AADRTSEGEY ISTSMIEEET 1260 HPSSLEESSE VPRGSSLEEG TSSGVTSATL VQQDAQTTNA AVEAPSHNFV VRGENQPIPV 1320 SVEDEVPRVS CATDVTLDDK ERWTNSYSNK ELIASHDTSK CEPSRVTIKT YFRVKRGSRA 1380 AQELHNGTEV CISQHDRELG NIEPSILDPR PSPEIGSKRK RGVGQKMDGN SNFNGYIRGP 1440 CEGLRPRAAK DATVSRIDIH NQVEEQPVAK KVKRPSDVPV PPKDKKKEQV RKPHSCNLGG 1500 CSMSFQTKEE LMVHKRNRCP HEGCGKKFSC HKYAMVHSRV HDSARPFKCP WKGCSMSFKW 1560 AWAQTEHIRV HTGEKPYKCK VDGCGLSFRF VSDFSRHRRK TGHYVS

Sequence ? help Back to Top

Protein Sequence Length: 1606 aa Download sequence

MGDVKIPNWL KGLPLAPEFH PTHTEFADPI AYISKIEKEA CEFGICKIIP PLPKPSKRYV  60
FSNLNKSLAK RPELGSDLIP GNDGDAVKVG SGDGSNDGEV RAVFTTRHQE LGQTVKRAKG  120
AGVQDPPPSG VDKQVWQSGE VYTLEQFESK SRAFARSILG TIRDVSPLVI EAMFWKAASE  180
KPIYIEYAND VPGSAFEEPE GLLCYSRRRR RKRNSYHRSG PNSDSKKSEM ISSCERKSQN  240
GEVEDASPKN VSLTSVEVPK SSALPGIVST DETSQSSRKK SQNSSCDVEG TAGWKLSNSP  300
WNLQVIARSP GSLTRFMPDD IPGVTSPMVY IGMLFSWFAW HVEDHELHSM NFLHNGSAKT  360
WYSVPGDYAF AFEELIRTEA YGGTADRLAA LSLLGNKTTL MSPEVVIASG IPCCRLIQNP  420
GEFVVTFPRA YHVGFSHGFN CGEAANFGTP QWLKVAKEAA VRRAAMNYLP MLSHQQLLYL  480
STMSFVSRVP KSLLPGVRSS RMRDRQKEDR ELSVKKAFIE DILNENDVLS ALLGKESSCR  540
AVLWNPDLLP NASKESSIPT ASAPVDTNSK ENATDTQGGN STNDQNFLVD EMSLYMENLN  600
DLYLGSDDLS DDFQVDSGTL ACVACGILGF PFMSVVQPSE KASMELQPEC ILAEELPGVS  660
GNSHISPEHS ESFKGCATED NAFPHARDPV LPCTTRFNNC WNTVDKFLRP RSFCLEHAVE  720
TLELLQCKGG ANMLVICHSD YQKIKAPAAA IAEEIGCPFN YNEVPLDIAS NEDLNLIDLA  780
VDDGCDECGE DWTSKLGINL RYCVKVRKSS SSKRVQHALA LGEVFSKQSC SSEFLAVNWK  840
SRRSRTKKVY LDAPYKQCDS IDKKKEEVVE AKSADATSFK REAKIIQYSR RNKRKPSTST  900
GAGRVVEHPG TSEELDKHNR RASDNSIYNN GKSTSICARL DSFTSDSTEM HPDVQMLEAT  960
RDICLDSTLS QAADTVALTA GSADAQIENR SLEERNMNGG GCNLAVSESG MQDEIKILKE  1020
ARQNNSIIPL VIARDERSEK HRGEQENEKL NKNDDNCNLV SEGQSQLWSQ EDVLMNVVSV  1080
FTKSTNLSAA DSIVTSSEEQ IVNAVIEKSC VNSEVCESMT LGDEVQQEIQ TTNRSNDKAP  1140
VSCSSTLLND PTFAAAECQV EFERETHIVE EFSNVVSSEF KPEEDIEIPK GRYAKPSLSP  1200
TRRVGQHSPA STDRLSGVAK AFCASADFQP GPTSHGEEFQ AADRTSEGEY ISTSMIEEET  1260
HPSSLEESSE VPRGSSLEEG TSSGVTSATL VQQDAQTTNA AVEAPSHNFV VRGENQPIPV  1320
SVEDEVPRVS CATDVTLDDK ERWTNSYSNK ELIASHDTSK CEPSRVTIKT YFRVKRGSRA  1380
AQELHNGTEV CISQHDRELG NIEPSILDPR PSPEIGSKRK RGVGQKMDGN SNFNGYIRGP  1440
CEGLRPRAAK DATVSRIDIH NQVEEQPVAK KVKRPSDVPV PPKDKKKEQV RKPHSCNLGG  1500
CSMSFQTKEE LMVHKRNRCP HEGCGKKFSC HKYAMVHSRV HDSARPFKCP WKGCSMSFKW  1560
AWAQTEHIRV HTGEKPYKCK VDGCGLSFRF VSDFSRHRRK TGHYVS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	207	213	RRRRRKR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04240.1	0.0	C2H2 family protein