PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0000187.1_g000008.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family WOX
Protein Properties Length: 249aa    MW: 27542.8 Da    PI: 8.2148
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0000187.1_g000008.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox451.9e-143091257
                               T--SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                   Homeobox  2 rkRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                               ++R+ +t++ +++L+elF++   r p+ e+ +++  +l    +++ ++V++WF N+Ra+ek+
  Rmu_sc0000187.1_g000008.1 30 STRWIPTTDHIRILKELFYNkgVRSPTIEQVQRICLQLkwygKMEFKNVYYWFVNQRAREKQ 91
                               58*****************7789*************************************97 PP
2Wus_type_Homeobox83.72.2e-272993265
          Wus_type_Homeobox  2 artRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                               ++tRW Pt++ i+iL+el++ +G+r+P+ e++qri  +L+ yGk+e kNV+yWF N++aRe+qk+
  Rmu_sc0000187.1_g000008.1 29 SSTRWIPTTDHIRILKELFYnKGVRSPTIEQVQRICLQLKWYGKMEFKNVYYWFVNQRAREKQKK 93
                               689**************98769*****************************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    
MEPQTQQPTE DGGGNKAAGS SANMLRKKSS TRWIPTTDHI RILKELFYNK GVRSPTIEQV  60
QRICLQLKWY GKMEFKNVYY WFVNQRAREK QKKRSTSDVH VPMQRSGLVG DDNVTNWKHE  120
DQYINFGSSA PASASSAGVM IAFKGQMGNY GGYGSMNMEK SARDCSISAG GGTCSTFFDM  180
NVEQIFMEQR GEDHQEIETF SLFPVHGEDI FGNMKTTSDG GGGHGGASHT SLELSLSCEG  240
KAGKSFRSC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17950.11e-25WOX family protein