PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0000194.1_g000026.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family ARF
Protein Properties Length: 740aa    MW: 82429 Da    PI: 6.6203
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0000194.1_g000026.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.75.4e-24126226198
                                EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-E CS
                         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDf 79 
                                f+kvlt sd++++g +++ +k+a+e+     + + + +++l+ +d++g +W++k+i+r++++r++lt+GW+ Fv +++L +gD+
  Rmu_sc0000194.1_g000026.1 126 FCKVLTASDTSTHGGFSVLRKHATEClppldKTQATPTQELVAKDLHGYEWRFKHIFRGSPRRHLLTTGWSTFVTSKRLSAGDS 209
                                99**************************998444455669******************************************** PP

                                EEEEE-SSSEE..EEEEE- CS
                         B3  80 vvFkldgrsefelvvkvfr 98 
                                +vF   + +++ l+v+++r
  Rmu_sc0000194.1_g000026.1 210 FVFL--RGESGDLRVGIRR 226
                                ****..4489999****98 PP
2Auxin_resp105.56.1e-35252331183
                 Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                                a+ha++t++ F v+Y+Pr+  s+F+++++k+++a+++k+svGmRfkm+fe+ed++err+sGt++g++d++p +W +S+WrsLk
  Rmu_sc0000194.1_g000026.1 252 ASHAVATQTLFVVYYKPRT--SQFIISLNKYLEAVNNKFSVGMRFKMRFEGEDAPERRFSGTIIGLEDISP-HWADSEWRSLK 331
                                789***************6..9***********************************************99.*********96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 740 aa     Download sequence    
MMTNQAGSYS QPEGGDVLYP ELWKACAGPL VEVPRHKERV YYFPQGHMEQ LEASTTTNPE  60
VNQGIPRFNL PSKILCRVMH VQLLAEQETD EVYAQITLIP EANQTTKPTS PDECPSEPER  120
PKVYPFCKVL TASDTSTHGG FSVLRKHATE CLPPLDKTQA TPTQELVAKD LHGYEWRFKH  180
IFRGSPRRHL LTTGWSTFVT SKRLSAGDSF VFLRGESGDL RVGIRRLARQ QSSMPSSVIS  240
SQSMHVGVLA TASHAVATQT LFVVYYKPRT SQFIISLNKY LEAVNNKFSV GMRFKMRFEG  300
EDAPERRFSG TIIGLEDISP HWADSEWRSL KVQWDESASI PRPDRVSPWE IEPYVASIPA  360
SLSPSTVLKN KRPRLLPEIP APDTVVLKNK RPRLLPEIPA PDTASSITWH DVTQLSGAAE  420
GQRSENHVSL NHQQADIISS STCISRTKTD GGWLSSPTVE DSKSGPAWPR FSGYSTPTSS  480
KPKNDLILDH VEKRKKTETG ASCLIFGVDF SSHLNSSHSV EKPPPQPIIA STRATEGQVS  540
ISVEAESDQK SDLSKASKES KAQFQVSPKE TLSKQSSSAS TRSRVKVQMQ GIAVGRAVDL  600
TMLEGYDQLI VELEEMFDIK GQIGPRNKWE IVFTDDEGDM MLAGDDPWLE FCNMVRRIFI  660
CSSQDVKKIS AGRKRLSMSS LEVEGTKPWK DCLSNKEEEA KGHHREERLE EIARDGHEAL  720
VEAVEHEEED HHGLCAGCVA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23980.10.0ARF family protein