PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0000208.1_g000038.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

MYB_related

Protein Properties

Length: 799aa MW: 87633.6 Da PI: 4.6318

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0000208.1_g000038.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	33.5	9.7e-11	648	689	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +W +++ el++++++q+G++ + Ia+ ++ gRt++q+k+++ k Rmu_sc0000208.1_g000038.1 648 KWNEQDTELFYEGIEQFGSD-FGMIAQLFP-GRTRNQIKLKFKK 689 8*****************.*****.********986 PP

Sequence ? help Back to Top
Protein Sequence Length: 799 aa Download sequence
METDVAAEVQ QEEAAVTEVH SLMKSDQSDD GDGFGETLAV RYGGILYSIQ VDITVGVALN 60 MDDLDFEPTG PVRVAGRFRP KAKPKSTKVA STAAASDLPN VVTENSIPVS STVSDTVPSA 120 ISVDVGEVKL THPVGSSSEI SGSLELSGNN EHLCSSVLSF DGDRATKPSE SAAADTLQQS 180 VMVAASNGSD GSHSVFGKSA GENADIFSGL ECLDDFLPQT TSGTVPASGK SPDKVNGEKC 240 GAPTHCSIES SAFLACDVAD AQTVSDFCAT QDPVSCTEAA MSNKHGEFRL ETKEFEALDD 300 VSEVPISTGR HAGKFQPKLQ VKKGKENPNI PHSEVESTTL AACENFETGE MDESSLCTIQ 360 PGDVHDHISS TFGDSIAPNP TPNFQANAEN LAETTQLDEA VFGDAAHSEG VCRRGHKSGN 420 GKESTASNRP QKRRGSAADE EAKDGTSSRK SRKQLPHQQV DEAGNNTNDD SFIAENSNDF 480 DGNEDKKHNT ERRKRAPRKS KIPASENEKP VQKRKRTKKA PDEPTEELTK KKFSHSTRRN 540 RRHVDKSLLE IPEDDIDPQK VPMKDLIRLR EYRERLAIKE AAKLKTPASN QSAYDEFHKE 600 ASHNEEENFG FEQDRSSGED QAGYRDRVST SSSSFNYQSF MNKERPSKWN EQDTELFYEG 660 IEQFGSDFGM IAQLFPGRTR NQIKLKFKKE DRQNPIRMNE AFRRHSRDNS KYVLVINELQ 720 KVAREKQESN ADESNDQEEV ELTHDNDGGV TKPEWDKIED METDVGAEVQ QEEAAVVHSP 780 MKSDQIDGGD SFSGWDDDF

Sequence ? help Back to Top

Protein Sequence Length: 799 aa Download sequence

METDVAAEVQ QEEAAVTEVH SLMKSDQSDD GDGFGETLAV RYGGILYSIQ VDITVGVALN  60
MDDLDFEPTG PVRVAGRFRP KAKPKSTKVA STAAASDLPN VVTENSIPVS STVSDTVPSA  120
ISVDVGEVKL THPVGSSSEI SGSLELSGNN EHLCSSVLSF DGDRATKPSE SAAADTLQQS  180
VMVAASNGSD GSHSVFGKSA GENADIFSGL ECLDDFLPQT TSGTVPASGK SPDKVNGEKC  240
GAPTHCSIES SAFLACDVAD AQTVSDFCAT QDPVSCTEAA MSNKHGEFRL ETKEFEALDD  300
VSEVPISTGR HAGKFQPKLQ VKKGKENPNI PHSEVESTTL AACENFETGE MDESSLCTIQ  360
PGDVHDHISS TFGDSIAPNP TPNFQANAEN LAETTQLDEA VFGDAAHSEG VCRRGHKSGN  420
GKESTASNRP QKRRGSAADE EAKDGTSSRK SRKQLPHQQV DEAGNNTNDD SFIAENSNDF  480
DGNEDKKHNT ERRKRAPRKS KIPASENEKP VQKRKRTKKA PDEPTEELTK KKFSHSTRRN  540
RRHVDKSLLE IPEDDIDPQK VPMKDLIRLR EYRERLAIKE AAKLKTPASN QSAYDEFHKE  600
ASHNEEENFG FEQDRSSGED QAGYRDRVST SSSSFNYQSF MNKERPSKWN EQDTELFYEG  660
IEQFGSDFGM IAQLFPGRTR NQIKLKFKKE DRQNPIRMNE AFRRHSRDNS KYVLVINELQ  720
KVAREKQESN ADESNDQEEV ELTHDNDGGV TKPEWDKIED METDVGAEVQ QEEAAVVHSP  780
MKSDQIDGGD SFSGWDDDF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	512	519	QKRKRTKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G39160.1	1e-42	MYB_related family protein