PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0000210.1_g000014.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

DBB

Protein Properties

Length: 353aa MW: 37533.8 Da PI: 4.3739

Description

DBB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0000210.1_g000014.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	19	3e-06	4	47	5	42
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 C+ +e e++ C ++ lC C ++ H H++vpl Rmu_sc0000210.1_g000014.1 4 QCNVCETAEANVLCCADEAALCWACDEKVHAAnklaskHQRVPL 47 7****99*******************66899999999986 PP
2	zf-B_box	27.7	5.6e-09	52	92	3	37
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......H 37 ++kC+ ++e +fC +++ llC++C ++ H H Rmu_sc0000210.1_g000014.1 52 MPKCDICQEAVGYFFCLEDRALLCRNCDVAVHTAnsfvsgH 92 799*****9******************9544555556 PP

Sequence ? help Back to Top
Protein Sequence Length: 353 aa Download sequence
MKIQCNVCET AEANVLCCAD EAALCWACDE KVHAANKLAS KHQRVPLSAS HMPKCDICQE 60 AVGYFFCLED RALLCRNCDV AVHTANSFVS GHRRFLLTGI KVGPESSPPG PGGGGGGGVA 120 GSSSSVKPDS GAASKCEANI QLAEECKVAP SSVAGMSFAG GSAAGSGPQW PMDEFLGFTD 180 FDQSFGYMDN GSSKADCGKL GASDSSILRS SEEEQEGYEC IGQVPEISWM VPEVPSPPTS 240 SGLYWPKTYQ NPSDSAVFVP DADCGKLGAS DSSILRSSEE EQEGYECIGQ VPEISWMVPE 300 VPSPPTSSGL YWPKTYQNPS DSAVFVPDVC YSEMENPLHC QQNGTVSKRR RQF

Sequence ? help Back to Top

Protein Sequence Length: 353 aa Download sequence

MKIQCNVCET AEANVLCCAD EAALCWACDE KVHAANKLAS KHQRVPLSAS HMPKCDICQE  60
AVGYFFCLED RALLCRNCDV AVHTANSFVS GHRRFLLTGI KVGPESSPPG PGGGGGGGVA  120
GSSSSVKPDS GAASKCEANI QLAEECKVAP SSVAGMSFAG GSAAGSGPQW PMDEFLGFTD  180
FDQSFGYMDN GSSKADCGKL GASDSSILRS SEEEQEGYEC IGQVPEISWM VPEVPSPPTS  240
SGLYWPKTYQ NPSDSAVFVP DADCGKLGAS DSSILRSSEE EQEGYECIGQ VPEISWMVPE  300
VPSPPTSSGL YWPKTYQNPS DSAVFVPDVC YSEMENPLHC QQNGTVSKRR RQF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G78600.1	3e-77	DBB family protein