PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0000215.1_g000011.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family M-type_MADS
Protein Properties Length: 124aa    MW: 14309.5 Da    PI: 10.0453
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0000215.1_g000011.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF21.92.3e-0713421443
                               HHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
                     SRF-TF 14 skRrngilKKAeELSvLCdaevaviifsst 43
                                 R   + KK + LS+LC+++v +i+f ++
  Rmu_sc0000215.1_g000011.1 13 QDRERNLCKKVYKLSILCGTDVYMIVFKPH 42
                               5688999*******************9765 PP
Sequence ? help Back to Top
Protein Sequence    Length: 124 aa     Download sequence    
MELLPSSRKK LLQDRERNLC KKVYKLSILC GTDVYMIVFK PHKTKPETWP LDCTQVHRII  60
NTYKAKLAMK NNDIKGTRSP SSLGAIRDAT DATTAHSNCS HETNKKMKLD LNLSDSYDNR  120
IDWR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G05860.24e-09M-type_MADS family protein