PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0000228.1_g000014.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

NF-YB

Protein Properties

Length: 156aa MW: 17336.2 Da PI: 4.5362

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0000228.1_g000014.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	48.6	2e-15	4	99	6	95
NF-YB 6 rflPianvsrimkkvlPanak......iskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkv 85 ++lP + v r++k l + +k + k+a e + fi ++++ a+d c+ kr+tingdd+l al ++ f ++veplk+ Rmu_sc0000228.1_g000014.1 4 AELPKTIVRRVVKDKLSECSKgdgdlnVHKEALTAFSESARIFIHYLSATANDICKGSKRQTINGDDVLKALEDIEFPEFVEPLKA 89 578888999999999987665444444789999999************************************************ PP NF-YB 86 ylkkyreleg 95 l+ re ++ Rmu_sc0000228.1_g000014.1 90 SLEGLREKNA 99 ****9765 PP

Sequence ? help Back to Top
Protein Sequence Length: 156 aa Download sequence
METAELPKTI VRRVVKDKLS ECSKGDGDLN VHKEALTAFS ESARIFIHYL SATANDICKG 60 SKRQTINGDD VLKALEDIEF PEFVEPLKAS LEGLREKNAG KKAGTSKAKE AKTKEVKKKR 120 KLEEPPPKEE EEEEEEEEEN QDEDGGDGEG ESSSKE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	101	121	KKAGTSKAKEAKTKEVKKKRK
2	117	122	KKKRKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27470.1	2e-39	NF-YB family protein