PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0000235.1_g000024.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family GRAS
Protein Properties Length: 666aa    MW: 76262.9 Da    PI: 6.6477
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0000235.1_g000024.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS370.91.7e-1132956642374
                       GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfs 85 
                                ++ L +cA+av+s ++  a++lL+++++++sp+g ++qRla+yf++ L+arl++ ++  ++ l +++ts    +e l+a++++ 
  Rmu_sc0000235.1_g000024.1 295 TTMLNQCAQAVASYEQGTASELLKKIRQHSSPHGHATQRLAHYFANSLEARLTGVGTPSFSPLFSRQTS---AAEYLQAYQVYT 375
                                5789**************************************************999999888888888...9*********** PP

                       GRAS  86 evsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLak 167
                                  +P+  +s+l aN++I++ +++e+r+H+iDf+is+G+QWp L+q L++R++gpp+l iTg++ p+ g   +e++eetg+rLa+
  Rmu_sc0000235.1_g000024.1 376 TSCPFKMMSQLFANRTIMKLAKNETRLHVIDFGISYGFQWPFLIQHLSERANGPPKLHITGIELPQRGfrPRERVEETGRRLAR 459
                                ******************************************************************99**************** PP

                       GRAS 168 fAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse 251
                                ++++++vpfe++v +a+ +e+++ e+L+++++E ++Vn+  +l++++de+v  +s+rd+vLkl+k+++P+++++   +  hn++
  Rmu_sc0000235.1_g000024.1 460 YCAKFNVPFEYDV-IAQGWETIQCEDLKIDRNELVVVNCLNRLKHIHDETVMENSPRDAVLKLIKNINPNLFIHGIINGTHNTP 542
                                ************9.7********************************************************************* PP

                       GRAS 252 sFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaak 335
                                 F++rf eal +y alfd++ea++pre+e r+ +Ere  gr+i+n+vaceg er+er et++kW+ r  +aG+k++pl++++ k
  Rmu_sc0000235.1_g000024.1 543 FFATRFKEALLHYYALFDMFEATVPREDERRMIIEREKCGRDIMNIVACEGVERFERPETYKKWQIRNARAGLKQLPLDQEELK 626
                                ************************************************************************************ PP

                       GRAS 336 qaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                ++k l + +++d +rvee+ +++++gWk+r L ++S W+
  Rmu_sc0000235.1_g000024.1 627 KVKNLYKSYHND-FRVEEDGQWILQGWKGRILRALSLWT 664
                                **********77.*************************5 PP
Sequence ? help Back to Top
Protein Sequence    Length: 666 aa     Download sequence    
MDTPFDRFSG PIDGFYFGHA PTSITFNPNL ANECKVTQES TNTLIHPANL DHPSDLSPAS  60
EEETVDVSYS NNHVIKYISD ILLDEVLEDE SCMLQDYLAV QAAEKSFYDV LNPNDPHSPN  120
KASLGESFSD TLLVSDSLFE RQSLGNFGNV GEANKFLPNG EFDIIDKKRY ELLPVARSNL  180
VKGNLACDKK NDVNNPTDGM KGKKNHHRGD GDYPEEGRSS KQSVVSADDS DPQEMFDKVL  240
LCQAEHHHRK WESCTPHCSM KREETEQLQQ NRQPKGSKTN RSKRQNKDEE GVDLTTMLNQ  300
CAQAVASYEQ GTASELLKKI RQHSSPHGHA TQRLAHYFAN SLEARLTGVG TPSFSPLFSR  360
QTSAAEYLQA YQVYTTSCPF KMMSQLFANR TIMKLAKNET RLHVIDFGIS YGFQWPFLIQ  420
HLSERANGPP KLHITGIELP QRGFRPRERV EETGRRLARY CAKFNVPFEY DVIAQGWETI  480
QCEDLKIDRN ELVVVNCLNR LKHIHDETVM ENSPRDAVLK LIKNINPNLF IHGIINGTHN  540
TPFFATRFKE ALLHYYALFD MFEATVPRED ERRMIIEREK CGRDIMNIVA CEGVERFERP  600
ETYKKWQIRN ARAGLKQLPL DQEELKKVKN LYKSYHNDFR VEEDGQWILQ GWKGRILRAL  660
SLWTPA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.11e-177GRAS family protein