PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0000236.1_g000047.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family WOX
Protein Properties Length: 229aa    MW: 25212.8 Da    PI: 5.101
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0000236.1_g000047.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox51.71.5e-1647107357
                                --SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                   Homeobox   3 kRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                                +R+t+t+ ql++L+ l++   +++p+ e+++e+  +l    ++++++V++WFqN +a++++
  Rmu_sc0000236.1_g000047.1  47 NRWTPTPAQLRILQGLYYDkgHKNPTPEQIQEICLHLkpygQIEDKNVFFWFQNLKARDRQ 107
                                7****************9557*************************************996 PP
2Wus_type_Homeobox96.22.7e-3145108264
          Wus_type_Homeobox   2 artRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 
                                +++RWtPtp Q++iL+ ly+ +G ++P+ e+iq+i  +L+ yG+iedkNVf+WFQN kaR+rqk
  Rmu_sc0000236.1_g000047.1  45 TTNRWTPTPAQLRILQGLYYdKGHKNPTPEQIQEICLHLKPYGQIEDKNVFFWFQNLKARDRQK 108
                                579***************9889*****************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    
MEPRTLQLME LQTQQQMEQQ AQQPTEEGGS NQAAGSSANT PIRPTTNRWT PTPAQLRILQ  60
GLYYDKGHKN PTPEQIQEIC LHLKPYGQIE DKNVFFWFQN LKARDRQKLK EFRKVRVGGS  120
LDLNFGSTSS TDGGRSIDLT FGSTDSTGDD GSIDLTLGLQ SFMERRGGDH QEVETLPLFP  180
EHGENILGNP KTTSEGGRSF GYYSGGSGGY NSGSPVSLEL SLHPFGATD
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17950.13e-21WOX family protein