PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0000256.1_g000010.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family MIKC_MADS
Protein Properties Length: 227aa    MW: 26429.9 Da    PI: 7.7395
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0000256.1_g000010.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF81.26.8e-26959151
                               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                               +rien + rqvtf+kRr+g+lKK +ELSvLCd+++ ++ifsstgk++ y+s
  Rmu_sc0000256.1_g000010.1  9 SRIENRTTRQVTFAKRRAGLLKKTHELSVLCDVQIGLVIFSSTGKMFQYCS 59
                               59***********************************************96 PP
2K-box51.25.4e-1872174297
                      K-box   2 qkssgks.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKne.....llleqiee 79 
                                q +sg++  +++++  l+ e++k++ke++ L  ++ ++ GedL+s  +++L++Le++Le+s++++R++K +     ++  q ++
  Rmu_sc0000256.1_g000010.1  72 QYASGTRiPQHSDTDFLNAEIRKIRKETQDLHLSLQRYTGEDLSSVRFEDLEELENRLEESVNRVRARKIKehqaaVFAHQHHY 155
                                556777777889999****************************************************99653334377888888 PP

                      K-box  80 lqkkekelq.eenkaLrkk 97 
                                +q++e e + ee+++L ++
  Rmu_sc0000256.1_g000010.1 156 QQQMEMEPKsEEHRQLMEQ 174
                                8888877541667777766 PP
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    
MGRGKIHISR IENRTTRQVT FAKRRAGLLK KTHELSVLCD VQIGLVIFSS TGKMFQYCSD  60
STSMEEIIRR YQYASGTRIP QHSDTDFLNA EIRKIRKETQ DLHLSLQRYT GEDLSSVRFE  120
DLEELENRLE ESVNRVRARK IKEHQAAVFA HQHHYQQQME MEPKSEEHRQ LMEQFPFCGE  180
EQPLLQLATT SMQPQFAYQA STSSLPPNPP QLHDFSLNTP IYGIHKP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G23260.31e-41MIKC_MADS family protein