PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0000259.1_g000004.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family NAC
Protein Properties Length: 197aa    MW: 22623.1 Da    PI: 4.4136
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0000259.1_g000004.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM114.88.9e-3681271128
                        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWk 84 
                                lppGfrF Ptdeelvv++L++k++  +l+  +vi+++d++ ++Pw+L+ k+  e k+wyf+s+r+        +nr+t++gyWk
  Rmu_sc0000259.1_g000004.1   8 LPPGFRFFPTDEELVVHFLQRKAALLPLHP-DVIPDLDLCPYDPWELNGKALCEGKQWYFYSRRA--------QNRVTSNGYWK 82 
                                79*************************999.99**************97777789*******985........589******** PP

                        NAM  85 atgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                                  g++++v+s  ++++vg+k+ + fy g+ap g +t+W+m+eyrl
  Rmu_sc0000259.1_g000004.1  83 PLGTEEPVISYtSNNKVGIKRYFGFYVGEAPLGIQTNWTMNEYRL 127
                                ********99867889***************************98 PP
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    
MADNPSQLPP GFRFFPTDEE LVVHFLQRKA ALLPLHPDVI PDLDLCPYDP WELNGKALCE  60
GKQWYFYSRR AQNRVTSNGY WKPLGTEEPV ISYTSNNKVG IKRYFGFYVG EAPLGIQTNW  120
TMNEYRLSAD SDTYASSSTT RSSKRRGHRK AVNEYSGYVL CRVYECDEDE DDDGTELSCL  180
DEVYLSLDDL DEISFPN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G64530.11e-74NAC family protein