PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0000260.1_g000014.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family SAP
Protein Properties Length: 459aa    MW: 50529.7 Da    PI: 7.2716
Description SAP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0000260.1_g000014.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SAP725.26.1e-22114581455
                        SAP   1 mssssssssseseegseggeggdass........gesegpsssrqraanevwpePflealatqvaidasrslGrlaaasalanv 76 
                                msssssss s+s+ ++++  +g+a++        g++egpsssr+ra+ evwpePfleala+qvai asr++Grlaaa alanv
  Rmu_sc0000260.1_g000014.1   1 MSSSSSSSPSSSSPSTSQFDSGNAAGtstvrqrrGDFEGPSSSRRRAVSEVWPEPFLEALAAQVAIAASRNSGRLAAAAALANV 84 
                                7888888777777666555555555578899999************************************************** PP

                        SAP  77 fqvcstwravsrsdllwqrltrriWrrtkllrdtWreeyiyrhrtarnfrtrrysyvtlqfdpadvdedndadalsCrclalsd 160
                                fqvcstwravsrsdllw+rltrriW rt+ll+dtWr+ey+y+hrtarnfrtrry+++ l fdp+dvd+   ad l+Crcl+lsd
  Rmu_sc0000260.1_g000014.1  85 FQVCSTWRAVSRSDLLWRRLTRRIWGRTRLLQDTWRDEYVYWHRTARNFRTRRYAHTILYFDPSDVDD---ADGLTCRCLTLSD 165
                                ****************************************************************9998...689********** PP

                        SAP 161 kylaaGfadGavrlfdletrlhvstflpqhrdrlGrfsravsGivisdsrlvfatldGdihvavidgagaaaarrallGdvvnd 244
                                +yla+GfadGavrlfdl+trlhvst++p++rdrlGrfsrav+Givis+srl+fatldGdihva + g     +rra+lG+v++d
  Rmu_sc0000260.1_g000014.1 166 NYLACGFADGAVRLFDLATRLHVSTYRPHQRDRLGRFSRAVTGIVISNSRLTFATLDGDIHVADVPG--PPITRRAHLGQVMDD 247
                                ***************************************************************9888..679************ PP

                        SAP 245 GalvdfaGsgrWwvGlyaGvpGrafhiWdaeteelvfvGGsltdPeavmGWhmlteltelvGrvrvteretavaCtslrlvvfd 328
                                G+lvdf+G+grWwvGlyaGvpGra hiWd++teelvfvGG lt+Peav+GWhmlte+  +vGrvrvt +etavaCts r++vfd
  Rmu_sc0000260.1_g000014.1 248 GVLVDFTGCGRWWVGLYAGVPGRAIHIWDSNTEELVFVGGELTEPEAVVGWHMLTEMSGFVGRVRVTTQETAVACTSARVIVFD 331
                                ************************************************************************************ PP

                        SAP 329 lrnqgvvlreeeerrGlivssldasneayvvvdsrGvatvrrvenleevcrfrvrg.aqrgvlgCvnggyalvyaggvlrvWei 411
                                lrn g vl+ee+ rrG++v++ d+s+ ayvvv +rG a+vrr+++ ee+crf+vrg  q g lgC+nggyal++aggv+rvWe+
  Rmu_sc0000260.1_g000014.1 332 LRNGGEVLAEEQYRRGIVVTATDVSDAAYVVVGNRGLARVRRADTSEELCRFTVRGaGQMGALGCMNGGYALMCAGGVIRVWEV 415
                                ********************************************************999************************* PP

                        SAP 412 ekkegylyslrervgevnalvaddrhvavsssdgtihlldfgaq 455
                                e+ e  ly++ e vg vna+v d rhva+  sd+t+hl+dfg q
  Rmu_sc0000260.1_g000014.1 416 ERGE-ELYTFWEHVGAVNAFVCDGRHVAAWGSDATLHLWDFGGQ 458
                                **87.89**********************************975 PP
Sequence ? help Back to Top
Protein Sequence    Length: 459 aa     Download sequence    
MSSSSSSSPS SSSPSTSQFD SGNAAGTSTV RQRRGDFEGP SSSRRRAVSE VWPEPFLEAL  60
AAQVAIAASR NSGRLAAAAA LANVFQVCST WRAVSRSDLL WRRLTRRIWG RTRLLQDTWR  120
DEYVYWHRTA RNFRTRRYAH TILYFDPSDV DDADGLTCRC LTLSDNYLAC GFADGAVRLF  180
DLATRLHVST YRPHQRDRLG RFSRAVTGIV ISNSRLTFAT LDGDIHVADV PGPPITRRAH  240
LGQVMDDGVL VDFTGCGRWW VGLYAGVPGR AIHIWDSNTE ELVFVGGELT EPEAVVGWHM  300
LTEMSGFVGR VRVTTQETAV ACTSARVIVF DLRNGGEVLA EEQYRRGIVV TATDVSDAAY  360
VVVGNRGLAR VRRADTSEEL CRFTVRGAGQ MGALGCMNGG YALMCAGGVI RVWEVERGEE  420
LYTFWEHVGA VNAFVCDGRH VAAWGSDATL HLWDFGGQE
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G35770.11e-169SAP family protein