PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0000260.1_g000028.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family NF-YB
Protein Properties Length: 303aa    MW: 31898.8 Da    PI: 10.0823
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0000260.1_g000028.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB185.93.1e-58120215297
                      NF-YB   2 reqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkv 85 
                                reqdrflPianvsrimkk+lPanakiskdaketvqecvsefisfvt+easdkcqrekrktingddllwa++tlGfe+yveplk+
  Rmu_sc0000260.1_g000028.1 120 REQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKI 203
                                89********************************************************************************** PP

                      NF-YB  86 ylkkyrelegek 97 
                                yl+kyre+egek
  Rmu_sc0000260.1_g000028.1 204 YLQKYREMEGEK 215
                                **********97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    
MLQLIHIGRL LPSPSLLVIL KGGRVHISDP RTRPTSQYPP GVPHLSLNER IQLRHVSRRS  60
IITPRIQRTP TTLLQKSRTS TQRSAAAPPE TPEKESPMAD SDNDSGGHNG HSQGGELSAR  120
EQDRFLPIAN VSRIMKKALP ANAKISKDAK ETVQECVSEF ISFVTGEASD KCQREKRKTI  180
NGDDLLWAMT TLGFEEYVEP LKIYLQKYRE MEGEKGAVGT AGRDKEGGSG GGGSAAGGGG  240
GSGGGLSSGT SGGGGGAFNG VYGGMGMLGH HQGHVYGSGG YQHQMGIGEK RGGSGGGASV  300
RSR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14540.11e-74NF-YB family protein