PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0000307.1_g000013.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family B3
Protein Properties Length: 463aa    MW: 53130.6 Da    PI: 9.0622
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0000307.1_g000013.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B356.26.4e-181742561399
                                TT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
                         B3  13 sgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                                ++   +p +f++++  +g   ++++  l+ +sg+ W v+l  +++ ++ ++++GW+ Fvk+++L+ gDf++F++dg+s+f  +v
  Rmu_sc0000307.1_g000013.1 174 RDETLIPPEFTKNFiwNGR--SPRECALRGPSGQCWAVEL--ERTENGLFFQNGWQCFVKDHHLELGDFLIFRYDGESKF--TV 251
                                566789*****88887544..6678***************..**********************************9999..77 PP

                                EEE-S CS
                         B3  95 kvfrk 99 
                                 ++++
  Rmu_sc0000307.1_g000013.1 252 IIYDR 256
                                77765 PP
2B344.23.4e-143574401797
                                E--HHH.HTT---..--SEEEEEETTS-EEEEEE.....EEETTE....EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
                         B3  17 vlpkkfaeehggkkeesktltledesgrsWevkliy...rkksgr....yvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                                 +pk+   + g+   ++kt++led++grsW v l+     kk+gr      lt+GW++ ++an++  gD+++F+l++  ++ ++
  Rmu_sc0000307.1_g000013.1 357 GFPKELGVAKGLM--NEKTMKLEDPTGRSWPVSLRAskfYKKDGRlydrLDLTSGWSQICEANKVSLGDTIIFELVK--QRVMK 436
                                4555555555555..4569***************77777777777777788***********************986..44456 PP

                                EEEE CS
                         B3  94 vkvf 97 
                                ++++
  Rmu_sc0000307.1_g000013.1 437 IHII 440
                                6665 PP
Sequence ? help Back to Top
Protein Sequence    Length: 463 aa     Download sequence    
MNEEDPRRLW VSLEERFGNV RDSLLPDLEV RWHNLRFCDF KSVLDYNSEA LRIKSLMEFC  60
GKEITDAMLI EKTLSTFPVS ALMVAKNYRI DVNARRITRF HELIGAMNVA EKHDNILVKN  120
YNSRSVETEH IPESNYSRTS KRGRQEQNPN LRYTSGHSDP YNSSTWEGPP VDLRDETLIP  180
PEFTKNFIWN GRSPRECALR GPSGQCWAVE LERTENGLFF QNGWQCFVKD HHLELGDFLI  240
FRYDGESKFT VIIYDRSACE KDVKVAKRRM NCSVCLRNNG NQARVKKEVL DLVTENNKNI  300
DSKGETVVAG EKGNDAMSGK RPANGYLEET TDGSILFKSE NSCFQRILTK HSKYHIGFPK  360
ELGVAKGLMN EKTMKLEDPT GRSWPVSLRA SKFYKKDGRL YDRLDLTSGW SQICEANKVS  420
LGDTIIFELV KQRVMKIHII RIGRLRGKGC AVRLVAPNVK SSI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.11e-19B3 family protein