PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0000319.1_g000009.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family B3
Protein Properties Length: 269aa    MW: 31013.7 Da    PI: 9.1812
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0000319.1_g000009.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B338.12.7e-12146232180
                                EEEE-..-HHHHT.T-EE--HHH.HTT.........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT- CS
                         B3   1 ffkvltpsdvlks.grlvlpkkfaeeh.........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangL 74 
                                f+k+lt sdv    +rl ++k+ +++h         ++  +e++++t +++ g+++ +k++ + ++  +vlt+GWk F+++++L
  Rmu_sc0000319.1_g000009.1 146 FEKQLTCSDVRDDqSRLAMSKEDVQKHlmpllneseDL--NEGIDVTTYNLAGKEYPMKFKTWVSK-IHVLTGGWKAFCRDHQL 226
                                89*******9987799**************99985444..48899***************989987.789*************9 PP

                                -TT-EE CS
                         B3  75 kegDfv 80 
                                 +   +
  Rmu_sc0000319.1_g000009.1 227 VQTQHF 232
                                854433 PP
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    
MSSSMSLGKS SRAPMTSLTD EKDIKAAFSL CFMKHVVLDS EKEIQKLEDT KRKSVGHIRV  60
YPNPETKPRA LQIEKQEEDT VNVAQGLSRK QQLQQGPMRK AVHTEEQEAM NGAKPQQGLF  120
YGDYTPPNLP PVPSLHKLIE ICSEPFEKQL TCSDVRDDQS RLAMSKEDVQ KHLMPLLNES  180
EDLNEGIDVT TYNLAGKEYP MKFKTWVSKI HVLTGGWKAF CRDHQLVQTQ HFVTVWMFRN  240
IATRNLCFVI EVRRLPVFET IKRRRIRQN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1262266KRRRI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G03170.16e-30B3 family protein