PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0000331.1_g000011.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

bHLH

Protein Properties

Length: 338aa MW: 37359.4 Da PI: 4.8357

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0000331.1_g000011.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	31.3	3.6e-10	262	302	10	55
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r+RR++iN+++ L+ l+P+ +K++ +++Le+Av+Y+k Lq Rmu_sc0000331.1_g000011.1 262 RKRREKINERLRVLQNLVPNG-----TKVDISTMLEEAVHYVKFLQ 302 9****************97.....8****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 338 aa Download sequence
MEYVGAVSEG EWSSLSGMYT AEEADFMAQL LENSPLSSMP GMEVPDAFWQ GNEESTLHMS 60 GYYEGSHCSL ETTNSNFIAS SNESYYLSDS NQMLAINNNS TSSMSIDFGI GDVKTINTYL 120 IERDERDQCS NRETSKGNIE ESGGSRPEAV NLEKRRSQSS LSKINSMKRS QSSDNVQMNK 180 RIMKAKKSLR ITTSNNEDGN AGPNRQSSSS CCSEDDSIVC EVSGGFSPTS SLSPKDAAVP 240 DLTGKSRARR GSASDPQSLY ARKRREKINE RLRVLQNLVP NGTKVDISTM LEEAVHYVKF 300 LQLQIKLLSS DDMWMYAPIC YNGMDLGLDR KLPTPSQP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	262	267	RKRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G33880.1	2e-61	bHLH family protein