PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0000332.1_g000057.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

bHLH

Protein Properties

Length: 381aa MW: 42752.3 Da PI: 8.365

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0000332.1_g000057.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	38.7	1.8e-12	203	249	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h ++Er+RR+++ ++f L ++P + kK++Ka++L A++Y+k+Lq Rmu_sc0000332.1_g000057.1 203 DHIMAERKRREKLSQRFIALSAIVPGL-----KKMDKASVLGDAIKYVKQLQ 249 699**********************.....9****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 381 aa Download sequence
MKGKATLINH NHNHKKRRIL CSIIFIHIMD VSSAKWFSDL GMDDYNFIHE GFTAQDIATA 60 LGENFKQSFS NESYSSYPTL TTQKSPNTTL SGGSSINETN SQTSFERPAK LVKTNSWNSA 120 ITEHVSPKPS CNSSSSHILS FENTNLNSSP PSKPHQQFSN GFDTTLRPKD EAPSEICMQF 180 ENQGYGTNKR PYSMTRTPSH AQDHIMAERK RREKLSQRFI ALSAIVPGLK KMDKASVLGD 240 AIKYVKQLQE SVKVLEEQTK KRTVESVVFV KKSQLVSSDD DTSSCDENFD GRSSDEWLPQ 300 IEARVSEKDV LIRIHCENQK GYVVKILSEI EKLQLSVVNS SVLPFGKSTL DITIIAQMDN 360 ECNITVTDLA KSLRVALLKF M

Sequence ? help Back to Top

Protein Sequence Length: 381 aa Download sequence

MKGKATLINH NHNHKKRRIL CSIIFIHIMD VSSAKWFSDL GMDDYNFIHE GFTAQDIATA  60
LGENFKQSFS NESYSSYPTL TTQKSPNTTL SGGSSINETN SQTSFERPAK LVKTNSWNSA  120
ITEHVSPKPS CNSSSSHILS FENTNLNSSP PSKPHQQFSN GFDTTLRPKD EAPSEICMQF  180
ENQGYGTNKR PYSMTRTPSH AQDHIMAERK RREKLSQRFI ALSAIVPGLK KMDKASVLGD  240
AIKYVKQLQE SVKVLEEQTK KRTVESVVFV KKSQLVSSDD DTSSCDENFD GRSSDEWLPQ  300
IEARVSEKDV LIRIHCENQK GYVVKILSEI EKLQLSVVNS SVLPFGKSTL DITIIAQMDN  360
ECNITVTDLA KSLRVALLKF M

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	208	213	ERKRRE
2	209	214	RKRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37850.1	3e-76	bHLH family protein