PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Rmu_sc0000338.1_g000013.1

Organism

Rosa multiflora

Taxonomic ID

74647

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa

Family

Protein Properties

Length: 160aa MW: 18528.4 Da PI: 9.6298

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Rmu_sc0000338.1_g000013.1	genome	GDR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	37.6	3.9e-12	49	155	2	96
EEE-..-HHHHTT-EE--HHH.HTT.............---..--SEEEEEETTS.-EEEEEE..EEETTEEEE-TTHH.HHHH CS B3 2 fkvltpsdvlksgrlvlpkkfaeeh.............ggkkeesktltledesg.rsWevkliyrkksgryvltkGWk.eFvk 70 +k+lt sd ++++rl +pk+ +++h + ++ +t++d + + e+ ++y+ +s++yvl+++Wk eFv+ Rmu_sc0000338.1_g000013.1 49 KKKLTVSDLGELSRLLVPKSLTQKHvlrfmnkslnervH--SSNGELVTVYDCDMkSKHELVFKYWPSSKSYVLQANWKkEFVN 130 69999*********************98887766431..225668899995554677888888*********737* PP HHT--TT-EEEEEE-SS.SEE..EEEE CS B3 71 angLkegDfvvFkldgr.sefelvvkv 96 +LkegD + ++ d r s f v+++ Rmu_sc0000338.1_g000013.1 131 VRKLKEGDQIGLYWDARrSIF--VFSL 155 **********99987654555..6555 PP

Sequence ? help Back to Top
Protein Sequence Length: 160 aa Download sequence
MAETLLFPSL FASTREEQHL PCALNQAEHR GLDLGLSLGS IDYDPWIIKK KLTVSDLGEL 60 SRLLVPKSLT QKHVLRFMNK SLNERVHSSN GELVTVYDCD MKSKHELVFK YWPSSKSYVL 120 QANWKKEFVN VRKLKEGDQI GLYWDARRSI FVFSLLKRAD

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33720.1	3e-24	B3 family protein