PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Rmu_sc0000360.1_g000034.1
Organism
Rosa multiflora
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Rosoideae; Rosoideae incertae sedis; Rosa
Family WOX
Protein Properties Length: 249aa    MW: 27790 Da    PI: 8.4816
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Rmu_sc0000360.1_g000034.1genomeGDRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox451.9e-143091257
                               T--SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
                   Homeobox  2 rkRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                               r+R+ +t++ +++L+elF++   r p+ e+++++  +l    +++ ++V++WF N+Ra+ek+
  Rmu_sc0000360.1_g000034.1 30 RTRWIPTTDHIRILKELFYNkgVRSPTIEHIQRICLQLkwygKIEFKNVYFWFVNQRAREKQ 91
                               89*****************7789*************************************97 PP
2Wus_type_Homeobox83.52.5e-272993265
          Wus_type_Homeobox  2 artRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                               +rtRW Pt++ i+iL+el++ +G+r+P+ e+iqri  +L+ yGkie kNV++WF N++aRe+qk+
  Rmu_sc0000360.1_g000034.1 29 SRTRWIPTTDHIRILKELFYnKGVRSPTIEHIQRICLQLKWYGKIEFKNVYFWFVNQRAREKQKK 93
                               789**************98769*****************************************96 PP
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    
MEPQNRHPTE DGGSNKAAGS SANMLRRKSR TRWIPTTDHI RILKELFYNK GVRSPTIEHI  60
QRICLQLKWY GKIEFKNVYF WFVNQRAREK QKKRSTSDVH VPMQRSGLVG DDNVTNWKHE  120
DQYINFGSSA PTSASSAGVM IAFNGQMGNY GCYGSMNMEK SARDCSISAG GETSSTFFDM  180
NVEQTFMEQR GEEHQEIETL SLFPVHGEDI CGNMKTTSDG GGGHGGGSHT SLELSLSCEG  240
KAGKSFRSR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17950.13e-28WOX family protein